PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931367.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Protein Properties

Length: 887aa MW: 98055 Da PI: 7.5592

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931367.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57.1	3.3e-18	368	467	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g+ W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_010931367.1 368 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKNWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSRID-PEGK 460 99************************555566778***********99899999999.*******************987.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_010931367.1 461 LVMGFRK 467 7777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.8E-30	360	473	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.8E-20	365	468	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.00E-23	366	467	No hit	No description
SMART	SM01019	4.5E-21	368	468	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.025	368	469	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.7E-15	368	467	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	15.021	581	631	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.0E-13	586	628	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 887 aa Download sequence Send to blast
MGSKRCRNAR CGATEPGGEG EWRKGWGLKS GGFATLCDKC GRAYEQLVFC DKFHLNETGW 60 RNCRFCSKPL HCGCIASKSS FDLLDNGGVQ CISCMKNSKC ESAQVPCEVI QELLPQPPQL 120 VLAPSSVSPM DEKEGNDFVA RLTINAGELQ HTSATGERDN CKGSDIQLGS STEGDGHSIL 180 VLAQRESING SFGRIQREQV ALHLGEKGST CFTNKKDGPI GSSLVINKGD RNDTVSDKII 240 YESLAHACLS ISLGTSNSGD MTACLNSKNP QITFPLSNTL NGGRQQNKVL SAFQQVQRSH 300 HLLPMPLRTS SGADSEASKE MLSCMSVARP PAEGRIRNQL LPRYWPRITD QELRQISGDS 360 NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLKIQDV KGKNWVFQFR 420 FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV IFSRIDPEGK LVMGFRKATN SVSLQDSQIS 480 AFASGAISNE AFFSGVIENL PIPLLALEKK RSRNIGPKSK RLLMDNEDAL ELKLTWEEAQ 540 DLLRPPPSVK PSIVMIEDHE FEEYEDPPVF GKRTIFTARA SGGQDQWVQC DDCFKWRRLP 600 VDVLLPSKWM CTDNKWDPKR SSCSVPNEIC PTEMQNLLQQ NAEMRRQRIA VSSKHSPPDL 660 EASTSETLGI GAAPPDNRNQ ARTLAATTTK HPRHRPGCTC IVCIQPPSGK GPKHKPTCMC 720 NVCMTVKRRF ATLMMRKKKR QSEQEEAESH KRLLWSSTEE TEAHSSFKYV PFQENAEKPE 780 MSKGYLDLNC HPGHEDHSQS PPARVSMMSL LQEASRPLDA YLKENGLASL ACEQQASSNL 840 QILPQVSGER EGRTPDESRH SSPCQERGSV NADEGDHKPE QVQNDAA

Sequence ? help Back to Top

Protein Sequence Length: 887 aa Download sequence Send to blast

MGSKRCRNAR CGATEPGGEG EWRKGWGLKS GGFATLCDKC GRAYEQLVFC DKFHLNETGW  60
RNCRFCSKPL HCGCIASKSS FDLLDNGGVQ CISCMKNSKC ESAQVPCEVI QELLPQPPQL  120
VLAPSSVSPM DEKEGNDFVA RLTINAGELQ HTSATGERDN CKGSDIQLGS STEGDGHSIL  180
VLAQRESING SFGRIQREQV ALHLGEKGST CFTNKKDGPI GSSLVINKGD RNDTVSDKII  240
YESLAHACLS ISLGTSNSGD MTACLNSKNP QITFPLSNTL NGGRQQNKVL SAFQQVQRSH  300
HLLPMPLRTS SGADSEASKE MLSCMSVARP PAEGRIRNQL LPRYWPRITD QELRQISGDS  360
NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGLPLKIQDV KGKNWVFQFR  420
FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV IFSRIDPEGK LVMGFRKATN SVSLQDSQIS  480
AFASGAISNE AFFSGVIENL PIPLLALEKK RSRNIGPKSK RLLMDNEDAL ELKLTWEEAQ  540
DLLRPPPSVK PSIVMIEDHE FEEYEDPPVF GKRTIFTARA SGGQDQWVQC DDCFKWRRLP  600
VDVLLPSKWM CTDNKWDPKR SSCSVPNEIC PTEMQNLLQQ NAEMRRQRIA VSSKHSPPDL  660
EASTSETLGI GAAPPDNRNQ ARTLAATTTK HPRHRPGCTC IVCIQPPSGK GPKHKPTCMC  720
NVCMTVKRRF ATLMMRKKKR QSEQEEAESH KRLLWSSTEE TEAHSSFKYV PFQENAEKPE  780
MSKGYLDLNC HPGHEDHSQS PPARVSMMSL LQEASRPLDA YLKENGLASL ACEQQASSNL  840
QILPQVSGER EGRTPDESRH SSPCQERGSV NADEGDHKPE QVQNDAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-67	346	475	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	726	739	KRRFATLMMRKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931367.1	0.0	B3 domain-containing protein Os07g0679700 isoform X3
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2H3ZRI8	0.0	A0A2H3ZRI8_PHODC; B3 domain-containing transcription repressor VAL2-like
STRING	XP_008792230.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]