PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931442.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 341aa MW: 38839.8 Da PI: 8.289

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931442.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.3	7.1e-54	8	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+++v++ ++++ ++i+evdiyk++PwdLp k+ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++s+ XP_010931442.1 8 LPPGFRFHPTDEELIQHYLRNRVASLPCPV-SIIAEVDIYKFDPWDLPVKAMFGDREWYFFSPRDRKYPNGIRPNRAAASGYWKATGTDKPIVSS 101 79**************************.89***********8777899**********************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+kk Lvfykgr pkg+kt W+mheyrl XP_010931442.1 102 kGNENIGVKKALVFYKGRPPKGVKTGWIMHEYRL 135 67788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-65	5	167	IPR003441	NAC domain
PROSITE profile	PS51005	61.997	8	167	IPR003441	NAC domain
Pfam	PF02365	4.6E-28	9	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MSNPTTSLPP GFRFHPTDEE LIQHYLRNRV ASLPCPVSII AEVDIYKFDP WDLPVKAMFG 60 DREWYFFSPR DRKYPNGIRP NRAAASGYWK ATGTDKPIVS SKGNENIGVK KALVFYKGRP 120 PKGVKTGWIM HEYRLAQALN NNSFRPMKLR DSSMRLDDWV LCRIYKKNNY TLSTDPEQDD 180 SAVEDVFMPS LTNTTPQNSP PKLPKSCSLT ELLNNVDFSA LSQLLEIPPD MPNLEQGPIV 240 HPSSNQTSIN NTSSSDANYF LVQQLSQTET PVLPPENSLK RQWTVDRCLE DGSELSHPPK 300 KLLNSSIFTS FTNQFNSQQN NLLSNPFFNQ QLQLNSYLKF Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-71	7	169	14	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931442.1	0.0	NAC domain-containing protein 2
Swissprot	Q84TD6	9e-99	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A3Q0HZN3	0.0	A0A3Q0HZN3_PHODC; NAC transcription factor 29-like
STRING	XP_008792524.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	3e-95	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]