PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931456.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 425aa MW: 47197.3 Da PI: 7.7825

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931456.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1.1e-33	51	105	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl XP_010931456.1 51 KPRLKWTPELHQRFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 105 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.475	48	108	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-31	49	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-17	50	106	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-23	51	106	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-10	53	104	IPR001005	SANT/Myb domain
Pfam	PF14379	7.0E-22	152	199	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MSIHQQEMYR QHQGKHDLFS SRAAFPPERH LFLQGGNSPG NSGLILSTDA KPRLKWTPEL 60 HQRFIEAVNQ LGGADKATPK TVMKLMGIPG LTLYHLKSHL QKYRLSKNLQ AQVNTGSINN 120 VTGSMIAADR TSGVSGSLMD DTNIVSHSNK TMQISKALQM NIEAQRQLHE QLEVQRHLQL 180 RIEAQGKYLQ SVLEKAQETL GKQSMDSVGL EAAKVQLSEL VSKVSKECFG TAFQSLKESS 240 SLHTLQGQTT QFADYSGDGC LISCEEFQKD QETHNVCVGL RTCPSNSLPC TQQLGKDSTL 300 EQTRFAWGGN VNQHSLLHSS TVKKSEMSIV PVDGESNIVS KNIKVQGENR CSISIFEARR 360 KGIDGYDSYL ELPNCKKAAV MQEREKQLNE FALPCLTSQL DLNSHDHNDP PPGCRQFDLN 420 GFSWS

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MSIHQQEMYR QHQGKHDLFS SRAAFPPERH LFLQGGNSPG NSGLILSTDA KPRLKWTPEL  60
HQRFIEAVNQ LGGADKATPK TVMKLMGIPG LTLYHLKSHL QKYRLSKNLQ AQVNTGSINN  120
VTGSMIAADR TSGVSGSLMD DTNIVSHSNK TMQISKALQM NIEAQRQLHE QLEVQRHLQL  180
RIEAQGKYLQ SVLEKAQETL GKQSMDSVGL EAAKVQLSEL VSKVSKECFG TAFQSLKESS  240
SLHTLQGQTT QFADYSGDGC LISCEEFQKD QETHNVCVGL RTCPSNSLPC TQQLGKDSTL  300
EQTRFAWGGN VNQHSLLHSS TVKKSEMSIV PVDGESNIVS KNIKVQGENR CSISIFEARR  360
KGIDGYDSYL ELPNCKKAAV MQEREKQLNE FALPCLTSQL DLNSHDHNDP PPGCRQFDLN  420
GFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	51	107	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	50	107	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029122645.1	0.0	myb-related protein 2-like
Refseq	XP_029122646.1	0.0	myb-related protein 2-like
TrEMBL	A0A2H3ZQZ2	0.0	A0A2H3ZQZ2_PHODC; myb-related protein 2-like
STRING	XP_008792509.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12279	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-114	G2-like family protein