PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931507.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 387aa MW: 41483.1 Da PI: 6.856

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931507.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.6	1.7e-10	193	251	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ +l +e+ XP_010931507.1 193 KRAKRILANRQSAARSKERKARYIAELERKVQTLQTEATTLSAQLTLLQRDTTELATEN 251 9***********************************************99988887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.7E-15	189	253	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.07	191	254	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.48E-10	193	245	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.9E-8	193	242	No hit	No description
Pfam	PF00170	3.7E-9	193	251	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.02E-22	194	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MQMETLNPPG IPNPNPHPRP NLPRPSAPPP AAPPPPSAFG DPHPTQCAPL HGPLHRRAQS 60 ELAFQIPEDL HLGSGDPAAS GNSDEIGSEE DPISTYIDVE KIGSRLEESG SGSDGAGSGN 120 QTAGNGAGGG EEVRAGNAGG EVAAPRPKHR HSSSADVSLM AKSRGEGVFG EVMEAKKAMP 180 PDKLVELAAI DPKRAKRILA NRQSAARSKE RKARYIAELE RKVQTLQTEA TTLSAQLTLL 240 QRDTTELATE NAELKLQLQA MEQQAQLRDV LNQTLKQEVG RLKIATGETS SPSGTYSMGL 300 LNVSYPSFFI PSQQQRANHQ AIQSRPQFQR SQPNISSHQF LTHNHALSDV MQQEPHGKLQ 360 GLDIRKGSHM AKSESSSISE GESSSTF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MQMETLNPPG IPNPNPHPRP NLPRPSAPPP AAPPPPSAFG DPHPTQCAPL HGPLHRRAQS  60
ELAFQIPEDL HLGSGDPAAS GNSDEIGSEE DPISTYIDVE KIGSRLEESG SGSDGAGSGN  120
QTAGNGAGGG EEVRAGNAGG EVAAPRPKHR HSSSADVSLM AKSRGEGVFG EVMEAKKAMP  180
PDKLVELAAI DPKRAKRILA NRQSAARSKE RKARYIAELE RKVQTLQTEA TTLSAQLTLL  240
QRDTTELATE NAELKLQLQA MEQQAQLRDV LNQTLKQEVG RLKIATGETS SPSGTYSMGL  300
LNVSYPSFFI PSQQQRANHQ AIQSRPQFQR SQPNISSHQF LTHNHALSDV MQQEPHGKLQ  360
GLDIRKGSHM AKSESSSISE GESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931507.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-103	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2H3Y1Y9	0.0	A0A2H3Y1Y9_PHODC; transcription factor RF2b
STRING	XP_008782655.1	1e-137	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-55	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]