PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931526.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 232aa    MW: 25458.7 Da    PI: 6.5588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931526.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-1256102354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h e+E+rRR+ri+s +++Lr++l  +     +K +Ka+ L kAve +++L
  XP_010931526.1  56 RNHREAEKRRRERIKSHLDRLRTILACD-----PKTDKASLLAKAVERVRDL 102
                     78************************98.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-1249109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.9153102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-1056102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1257112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-1059108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.0E-4140189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MYRSLSVSRD GGNPGGSGAA VAMPGYFMAS FYPMEMGSGS GSGGDASMDR ALIASRNHRE  60
AEKRRRERIK SHLDRLRTIL ACDPKTDKAS LLAKAVERVR DLKQQTAEIT ETQLFPTEND  120
EIVVLPSSSS NGQGSVFEAS LCCEDRSDLL PELIETLRSL RLKTLRAEIA TLGGRVRNVL  180
VVAREKEEYE EEAEDGEGAG GAFLRDALKA LVDRPVSDDR SKRRRVLDRS LA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221225KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931526.11e-166transcription factor bHLH106
SwissprotO806746e-56BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2H3XPJ61e-132A0A2H3XPJ6_PHODC; transcription factor bHLH106-like
STRINGXP_008786854.11e-133(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.14e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]