PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931538.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 297aa    MW: 32113.1 Da    PI: 6.46
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931538.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.8e-3095148155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  XP_010931538.1  95 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMGVDGLTRENVASHLQKYRL 148
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.78492151IPR017930Myb domain
SuperFamilySSF466896.09E-2092152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-3194153IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-2496148IPR006447Myb domain, plants
PfamPF002499.1E-998147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVEISRIVGM RDGTEEKEEE EEESNINSNN NWFASWEDGL PKPEELMPLS QTLITPDLAL  60
AFDLPSPVPA AATPHPDPDL GGGGDEGAAA RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA  120
VPKTIMQLMG VDGLTRENVA SHLQKYRLYL KRMQQSSSSS AALAGGHISA ADHQLFASGP  180
VPHHFLSPRG VAGPDPPFVP LVPVNPLHHH HHHHQIGQQY YYQRQIGHFG SAASSGVGGG  240
GAFDYRFLSP PPIGMQHMGM GMGMGFPPAA SSYGEQLEPG ERGGGRRELT LFPTGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-3395151157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931538.10.0transcription factor MYBC1
SwissprotO222105e-52MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2H3XTN31e-118A0A2H3XTN3_PHODC; transcription factor MYBC1-like
STRINGXP_008788550.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.12e-49G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]