PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931612.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 514aa MW: 55434.4 Da PI: 9.033

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931612.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010931612.1 81 FVCEICNKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	12.4	0.00048	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_010931612.1 157 WKCDKCSKKYAVQSDWKAHTKIC 179 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	80	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.03E-6	80	103	No hit	No description
PROSITE profile	PS50157	10.949	81	103	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.2E-5	81	103	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	81	103	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	122	152	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	0.001	145	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.03E-6	152	177	No hit	No description
SMART	SM00355	140	157	177	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MSNITGDGGS FSSENHTGEE EVHQSQQQQH QHPLHGTVAA MANSQPPALP VKKKRNLPGT 60 PDPTAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSTEVRKR 120 VYICPETTCV HHNPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHTKICG 180 TKEYKCDCGT IFSRRDSFIT HRAFCDALAD ENNKVNNGLM PTMSPNLQAH QVPELMMPIG 240 TSTADSPVGL SDFNNHDIKN PLKALPYDLM PTSLRSHAMA GSMLSTTSAT TLFSPRTFPS 300 GYAGLDNIKM GQPAFGSADM SATALLQKAA QLGATATCGT GAMSSPISHR SFVLGMAGSD 360 QNSSIRPYGS YNGVQTHGMG VDGGGFVNQF FGTAVGEGLG ASDIGMFPST AGMLNNGGGG 420 LRGGSGGSGL SYGGGGSGDV MTVDFLGVGR ARTVAAMRLH EQRQQQGMEF GGVGQQRLQG 480 LHPFQHQHQH QQQQQQQQQL SHGQAAMEKT MWDV

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MSNITGDGGS FSSENHTGEE EVHQSQQQQH QHPLHGTVAA MANSQPPALP VKKKRNLPGT  60
PDPTAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTSTEVRKR  120
VYICPETTCV HHNPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHTKICG  180
TKEYKCDCGT IFSRRDSFIT HRAFCDALAD ENNKVNNGLM PTMSPNLQAH QVPELMMPIG  240
TSTADSPVGL SDFNNHDIKN PLKALPYDLM PTSLRSHAMA GSMLSTTSAT TLFSPRTFPS  300
GYAGLDNIKM GQPAFGSADM SATALLQKAA QLGATATCGT GAMSSPISHR SFVLGMAGSD  360
QNSSIRPYGS YNGVQTHGMG VDGGGFVNQF FGTAVGEGLG ASDIGMFPST AGMLNNGGGG  420
LRGGSGGSGL SYGGGGSGDV MTVDFLGVGR ARTVAAMRLH EQRQQQGMEF GGVGQQRLQG  480
LHPFQHQHQH QQQQQQQQQL SHGQAAMEKT MWDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-33	153	217	3	67	Zinc finger protein JACKDAW
5b3h_F	6e-33	153	217	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931612.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1
Swissprot	Q9SCQ6	1e-114	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2H3YM78	0.0	A0A2H3YM78_PHODC; protein indeterminate-domain 2-like
STRING	XP_008800868.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]