PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931702.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 176aa    MW: 19859.9 Da    PI: 10.2113
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931702.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA29.69.3e-102746120
            GATA  1 CsnCgttkTplWRrgpdgnk 20
                    C+ C+ttkTplWR gp+g+k
  XP_010931702.1 27 CADCRTTKTPLWRGGPSGPK 46
                    ******************98 PP
2GATA23.76.8e-0884992035
            GATA 20 ktLCnaCGlyyrkkgl 35
                     +LCnaCG++yrk+++
  XP_010931702.1 84 QSLCNACGIRYRKNRR 99
                    46***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.8E-521110IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.5782144IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.6E-72647IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.91E-926113No hitNo description
PfamPF003204.2E-72746IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-484113IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDLSGEKETG TIDLGSSRES SGELKSCADC RTTKTPLWRG GPSGPKVVPI DLNPNRFEKL  60
DFDSFRGVFR SDPLFFFLSF GDPQSLCNAC GIRYRKNRRA LLELKEGERR ERKQMREEKS  120
STKELGGVSV KLRMLGVGSE VLFKRRSLLE RKKRRMGEVE EAAVLLMALS SGFLYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143153KRRSLLERKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931703.11e-84GATA transcription factor 15
TrEMBLA0A2H3YE621e-76A0A2H3YE62_PHODC; GATA transcription factor 15-like
STRINGXP_008797400.12e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.11e-16GATA transcription factor 15