PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931703.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 138aa    MW: 15397.8 Da    PI: 10.5138
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931703.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.36e-202761135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+ttkTplWR gp+g+k+LCnaCG++yrk+++
  XP_010931703.1 27 CADCRTTKTPLWRGGPSGPKSLCNACGIRYRKNRR 61
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.0862159IPR000679Zinc finger, GATA-type
SMARTSM004013.5E-172172IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-142161No hitNo description
CDDcd002026.33E-152675No hitNo description
Gene3DG3DSA:3.30.50.101.8E-162661IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-172761IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDLSGEKETG TIDLGSSRES SGELKSCADC RTTKTPLWRG GPSGPKSLCN ACGIRYRKNR  60
RALLELKEGE RRERKQMREE KSSTKELGGV SVKLRMLGVG SEVLFKRRSL LERKKRRMGE  120
VEEAAVLLMA LSSGFLYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105115KRRSLLERKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931703.12e-92GATA transcription factor 15
TrEMBLA0A2H3YE621e-84A0A2H3YE62_PHODC; GATA transcription factor 15-like
STRINGXP_008797400.12e-85(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-24GATA transcription factor 15