PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010931855.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 476aa MW: 51066.3 Da PI: 9.671

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010931855.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00013	243	265	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ F ++ L+ H + H XP_010931855.1 243 TCHRCGEQFGKWEALEAHHLSrH 265 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	244	265	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.23E-24	267	475	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.6E-9	294	473	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MNGFIGVSSV EMEGEKRYGA LSQMSKSHWR EGKGEKKKGD KMPAVWFALK KSLHCKSEPS 60 DVCEPKAKGH LSTILTRKPC RSGCSRSIAN LKDVIHGQRR HHERPASCSP RSIGSSEFLN 120 PITHEVVLSD SRCELKITGL GGGGGGPEGG AGVGSAYMGT LRPGTPGPGG GHHALNYSPS 180 SPLRGSTPPR RALGAAANRE GHNLGGSSLH DAVFGNGGGG SLFSSAPRAF HDVGSHGPSA 240 TITCHRCGEQ FGKWEALEAH HLSRHAVTEL VEGDSSRKIV EIICKASLLK PESSCGRIER 300 VLKVHNVQRT LARFEEYREM VKIKASKLPK KHPRCLADGN ELLRFYGTTV SCSLGMSGSS 360 NLCTSEKCNV CRIIRHGFST KKELKGGIGV FTTSTSGRAL ESTEVFDDNP SSRKALLVCR 420 VIAGRVHKPM DNLQDLASQS GFDSVAGKVG LYANIEELYL LNPRALLPCF VVICKH

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MNGFIGVSSV EMEGEKRYGA LSQMSKSHWR EGKGEKKKGD KMPAVWFALK KSLHCKSEPS  60
DVCEPKAKGH LSTILTRKPC RSGCSRSIAN LKDVIHGQRR HHERPASCSP RSIGSSEFLN  120
PITHEVVLSD SRCELKITGL GGGGGGPEGG AGVGSAYMGT LRPGTPGPGG GHHALNYSPS  180
SPLRGSTPPR RALGAAANRE GHNLGGSSLH DAVFGNGGGG SLFSSAPRAF HDVGSHGPSA  240
TITCHRCGEQ FGKWEALEAH HLSRHAVTEL VEGDSSRKIV EIICKASLLK PESSCGRIER  300
VLKVHNVQRT LARFEEYREM VKIKASKLPK KHPRCLADGN ELLRFYGTTV SCSLGMSGSS  360
NLCTSEKCNV CRIIRHGFST KKELKGGIGV FTTSTSGRAL ESTEVFDDNP SSRKALLVCR  420
VIAGRVHKPM DNLQDLASQS GFDSVAGKVG LYANIEELYL LNPRALLPCF VVICKH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010931855.1	0.0	uncharacterized protein LOC105052658
TrEMBL	A0A2H3XJB4	0.0	A0A2H3XJB4_PHODC; uncharacterized protein LOC103703552
STRING	XP_008784662.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3277	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-157	C2H2 family protein