PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932017.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 236aa    MW: 27242.6 Da    PI: 8.1173
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932017.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll ++v+++G   W+ ++ + g++R++k+c++rw++yl
   XP_010932017.1 16 KGAWTVEEDALLRRCVEKYGATEWRHVPLRAGLNRCRKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding50.64.3e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E +l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_010932017.1  69 RGSFGEDETDLIVRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNSHL 114
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.0141167IPR017930Myb domain
SuperFamilySSF466892.82E-2813110IPR009057Homeodomain-like
SMARTSM007176.6E-141565IPR001005SANT/Myb domain
PfamPF002499.7E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-201770IPR009057Homeodomain-like
CDDcd001671.27E-91863No hitNo description
PROSITE profilePS5129418.45568118IPR017930Myb domain
SMARTSM007171.3E-1468116IPR001005SANT/Myb domain
PfamPF002491.3E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2271117IPR009057Homeodomain-like
CDDcd001672.01E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSFDSTTGTK QPGIRKGAWT VEEDALLRRC VEKYGATEWR HVPLRAGLNR CRKSCRLRWL  60
NYLRPGINRG SFGEDETDLI VRLHKLLGNR WSLIAGRLPG RTANDVKNYW NSHLSKKHDV  120
RDHKERSKHD DKVLKPRPQT IPRTWIWSRD HLSSASEIQQ EESEMQEIPS SSKNHKTWVD  180
AQIIGVPNVE NVITKEMQTD NRVIQDDNKD DESLTGVGGW EDLLQDIDIW GDLGTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24121203110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932017.21e-167transcription factor MYB113-like
SwissprotQ9FNV91e-60MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3Q0HSF81e-140A0A3Q0HSF8_PHODC; transcription factor MYB114-like
STRINGXP_008779039.11e-143(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-62myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]