PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932023.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 292aa    MW: 31457.1 Da    PI: 8.6074
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932023.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-05109128221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C+ Cgk+Fs++  L  H+r
  XP_010932023.1 109 PCTECGKRFSSWKALFGHMR 128
                     5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.034108135IPR007087Zinc finger, C2H2
SMARTSM003550.0044108130IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.7E-6109130No hitNo description
PfamPF139121.2E-8110132IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-5110130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SuperFamilySSF576672.7E-6220247No hitNo description
PfamPF139121.9E-11225249IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621225247IPR007087Zinc finger, C2H2
SMARTSM0035514225247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280227247IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDASTDATTT TTTAIGFSPQ SQPHHNNTFS PLPPPPTLAA APPLLHWSTT NTTSNGGVFS  60
SGGLNLPLPS PDFTPYLPPT ATPKKPRPPR RKPDAAASTS AATAKTTPPC TECGKRFSSW  120
KALFGHMRCH PERQWRGINP PPHFRRLSSP GAAQFSDEEY QVATSLIMLA NGPPRDEHGI  180
DATVGSKVVS GWPQRRARQM NPRSEGEEGV VQKEWMDSEA LGSARNCNLC YKGFSSGQAL  240
GGHKRCHWER GEDQEGSSSS SAKNYVLDLN LPPPTESGES SPRPVVDLRL GI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932023.10.0zinc finger protein ZAT2-like
TrEMBLA0A2H3XPN31e-118A0A2H3XPN3_PHODC; zinc finger protein ZAT3-like
STRINGXP_008786947.11e-119(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-40C2H2-like zinc finger protein