PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932043.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 157aa    MW: 17293.4 Da    PI: 9.4949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932043.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-162473255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +k +g+WvAe+r+p++   r r++lg++ t+  Aa+a++ a  +l+g
  XP_010932043.1 24 PYRGVRMRK-WGKWVAEVREPRK---RSRIWLGSYSTPVAAARAYDTAVFYLRG 73
                    59*****99.*******999854...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.6422481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-302482IPR001471AP2/ERF domain
SMARTSM003801.2E-362487IPR001471AP2/ERF domain
CDDcd000187.82E-262582No hitNo description
PfamPF008471.1E-102573IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-212582IPR016177DNA-binding domain
PRINTSPR003673.3E-122536IPR001471AP2/ERF domain
PRINTSPR003673.3E-126383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEGGCCSTSE ETRKPAAGAV KERPYRGVRM RKWGKWVAEV REPRKRSRIW LGSYSTPVAA  60
ARAYDTAVFY LRGRSARLNF PEELAAEEDC EAATAAAGGM SAASIRKKAT EVGARVDALQ  120
TSLLSQPQQQ QQQSRSPRAP KYPDLNQEPS PESSDMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1625841575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932041.11e-111ethylene-responsive transcription factor ERF011 isoform X1
RefseqXP_019708843.11e-111ethylene-responsive transcription factor ERF011 isoform X1
RefseqXP_029122770.11e-111ethylene-responsive transcription factor ERF011 isoform X2
SwissprotQ9SNE15e-47ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A3Q0HQQ59e-81A0A3Q0HQQ5_PHODC; ethylene-responsive transcription factor ERF011-like
STRINGXP_008776525.12e-81(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-40DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]