PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932234.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 639aa    MW: 70389.2 Da    PI: 6.4173
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932234.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.85.1e-28184237155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+il lm+v+ Lt+e+v+SHLQkYRl
  XP_010932234.1 184 KPRVVWSIELHRKFVAAVNQL-GIDKAVPKKILSLMNVEKLTRENVASHLQKYRL 237
                     79*******************.********************************8 PP
2Response_reg74.15.3e-2531111109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+ + ++ll+++l + +y +v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+g+ + + + +  G
  XP_010932234.1   3 VLAVDDDSTCLKLLENLLLRCHY-DVTTTSQAIVALKLLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKAVMKGITHG 95 
                     799********************.***************888888*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_010932234.1  96 ACDYLLKPIRIEELKN 111
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004488.2E-311113IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363929.0E-1591632IPR017053Response regulator B-type, plant
SuperFamilySSF521722.7E-341126IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-401124No hitNo description
PROSITE profilePS5011041.8672117IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-223111IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.91E-2225116No hitNo description
SuperFamilySSF466891.97E-19181241IPR009057Homeodomain-like
PROSITE profilePS5129411.783181240IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29182242IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-25184237IPR006447Myb domain, plants
PfamPF002493.8E-6186236IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MRVLAVDDDS TCLKLLENLL LRCHYDVTTT SQAIVALKLL RENKDKFDLV ISDVHMPDMD  60
GFKLLELVGL EMDLPVIMLS ANGDTKAVMK GITHGACDYL LKPIRIEELK NIWQHVVRRK  120
KLYSRYQNKG ESSLKAQLPN SEGVQGPHDR SDELNRKRKG QMEEDEVDSE ENTHENEDSS  180
TQKKPRVVWS IELHRKFVAA VNQLGIDKAV PKKILSLMNV EKLTRENVAS HLQKYRLYLK  240
RLSTVANQQT HMATILGGRN SYINMSSLDG FRNFHTLRGS RQLPTLASFQ PNGLLGTMNS  300
STAFGMHGLV PSQTVQLGCT QNTRSYLFND LRKLQGISQP GNHQGNSIQG MPTSMGLGQL  360
QQLRVVQEAN NILPSGLSGS GPANGVFSNS FANMTNNTLS VQANKGQMQA GESGSYSSVR  420
MPSSSLDPFE YCFGDSSHFP DLVRWDDTWQ DALPSTDYCA STLPISVPFS NNCSSTNNIG  480
ASISQIISNM DGDICCQPSL HVSVAHMHDL VIGNDVHGQV SSVGRSMMPI PIGANEDTKL  540
SDFGSSDKSK QKFEDRKQNC SFNPIPNRTL SNGIGNKKMD TDVIDQTVLD APGLAQDCSI  600
DKSRADGQLT CKDEDALEST KSHCDFNSTD CSYDGLVDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25180243164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029122955.10.0two-component response regulator ORR24
SwissprotA2X1N21e-164ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA0A2H3WYB90.0A0A2H3WYB9_PHODC; Two-component response regulator
STRINGXP_008775535.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-111response regulator 12