PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932273.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 1355aa    MW: 149749 Da    PI: 8.1334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932273.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0006812391262122
                      EEET..TTTEEESSHHHHHHHHHH CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                      y C    C++sFs+k +L  H r 
  XP_010932273.1 1239 YICDieGCSMSFSTKQDLSLHKRD 1262
                      889999***************985 PP
2zf-C2H212.80.0003612641286323
                      ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                      Cp   Cgk F ++ +L++H ++H
  XP_010932273.1 1264 CPvkGCGKKFFSHKYLVQHRKVH 1286
                      9999*****************99 PP
3zf-C2H211.90.0006713221348123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C    Cg++F+  s++ rH r+  H
  XP_010932273.1 1322 YVCRepGCGQTFRFVSDFSRHKRKtgH 1348
                      899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.4E-173576IPR003349JmjN domain
PROSITE profilePS5118314.0773677IPR003349JmjN domain
PfamPF023755.4E-143770IPR003349JmjN domain
PROSITE profilePS5118433.22210379IPR003347JmjC domain
SMARTSM005585.6E-47210379IPR003347JmjC domain
SuperFamilySSF511974.39E-25224381No hitNo description
PfamPF023734.3E-36243362IPR003347JmjC domain
Gene3DG3DSA:3.30.160.607.8E-412351261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.412391261IPR015880Zinc finger, C2H2-like
SMARTSM003550.4912621286IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.96712621291IPR007087Zinc finger, C2H2
SuperFamilySSF576679.6E-612631298No hitNo description
PROSITE patternPS00028012641286IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.8E-512641290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.604.3E-812911316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002912921316IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15712921321IPR007087Zinc finger, C2H2
PROSITE patternPS00028012941316IPR007087Zinc finger, C2H2
SuperFamilySSF576679.41E-1013021346No hitNo description
Gene3DG3DSA:3.30.160.608.4E-1013171345IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84513221353IPR007087Zinc finger, C2H2
SMARTSM003550.2513221348IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013241348IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1355 aa     Download sequence    Send to blast
MAAAAAAGSL GDPTLPPPPP PPPTEVPQWL KSLPLAPEYH PTLAEFQDPI AYILKIEKEA  60
SRFGICKIVP PLPAPPRKTT VANLNRSFAA REPNPKKPPT FTTRQQQIGF CPRRPRPVQK  120
PVWQSGEHYT LQQFETKAKQ FERAYLRKAK KATSSFLSPL EIETLFWKAC ADKPFSVEYA  180
NDMPGSGFAP LGAARRWRGL EEEEEEEAAH VGETAWNMRG VSRAKGSLLR FMKEEIPGVT  240
SPMVYVAMMF SWFAWHVEDH ELHSLNYLHM GAGKTWYGVP RDAALAFEEV VRLHGYGGEV  300
NRLVTFALLG EKTTVMTPEV LMGAGIPCCR LVQNAGEFVV TFPGSYHTGF SLGFNCGEAA  360
NIATPGWLRV AKEAAIRRAS INYPPMVSHF QLLYELALSL CTRMPRGSRS EPRSSRLKDK  420
MKGEGEEIVK NIFVQNVIQN NHLLSFLLDK GSSCIVLPQD APESPLCSNA LVRSQVKAKP  480
RLSLGLCSHQ EAVEASRLLP SDDITPGWSA GRRDMSGLCS LKRNSISVSQ GKMITSATCG  540
RFGAADFYSS SDSQNEEGEK EGTFQGDGLL DQGLLACVTC GILSFACVAV IQPREAAAKY  600
LMSADCGFLS GHINGSGEVS GINKDASRQA DDYNLVSGSG QIGRHTENTV DDYWVHCNTY  660
SGQVSEQSVE VFSDNTGQRG ISALDLLASA YGDTSDTEEE ALHAKSDCTD ENDVKDFPSS  720
AKPIEHPNFA IELPNLCSSK DSQKETDLSF IGADCQNGTC AQNSYNNVGP DDPDGPTNVS  780
AGEKCQLKWE FCGSNQPENV KSAGTDSLDD NRKVTTSNSS IKSMEEPTDF SYREVDDGCR  840
ATETADNQQG NMKMGNASFG SEDLSVQPDV CCDLSEPTKG TAITTQSINV HTKMMNSGIP  900
AMRRCDKDSS RMHVFCLEHA VEVDKQLQPI GGMHIMLFCH PDYPKIEAEA KLLAEELGFD  960
YSWKDVHFKE ATEEEQERFG AALEDEEAIP VNSDWAVKLG INLYYSAGLS KSPLYSKQMP  1020
YNAVIYKAFG CNSPGNSPAK PKTSGRRPGR QKKIVVAGRW CGKVWMTNQV HPYLAHRNEA  1080
QDHDHVEQLY SQGTGQKPKV KTYTKDAPSE RNPSASDGTA ARKSGKKRKK PLRKASKKKP  1140
RHTQIDKSEA MEDVPETSSS PCGRVLRSSH SKQAVIANRK KFNLKDEAEG GPSARLRKQT  1200
SKAMEEVKTK SASRKQARQR KAKKAQATNP VTKDEDGEYI CDIEGCSMSF STKQDLSLHK  1260
RDICPVKGCG KKFFSHKYLV QHRKVHMDDR PLECPWKGCK MTFKWAWART EHIRVHTGDR  1320
PYVCREPGCG QTFRFVSDFS RHKRKTGHSV KKGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-71244683413Transcription factor jumonji (Jmj) family protein
6ip4_A2e-71244683413Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111251129KKRKK
211251139KKRKKPLRKASKKKP
311281138KKPLRKASKKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932273.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2H3YKE00.0A0A2H3YKE0_PHODC; lysine-specific demethylase REF6-like isoform X1
STRINGXP_008799926.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]