PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932291.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 702aa    MW: 78789.2 Da    PI: 7.8426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932291.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.58.7e-121181861486
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      +l +p kfa + gg    ++ + l+++ g++W+vk+      g+  ++ GW++Fv ++ +k+g+ ++Fk+++
  XP_010932291.1 118 ELLFIPPKFAPALGGL--IDQNICLQNSFGQRWRVKI--ALVHGSLAFAHGWRNFVLDHVIKVGELLIFKHVS 186
                     4699******999766..4567***************..66677799***********************764 PP
2B341.62.3e-136327012798
                     ---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  27 ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     g+k  e k +tl+d+  r W v +    + + + +t+GW++F kan+L+ gD++ F++++  e +l+v++fr
  XP_010932291.1 632 GKKRYERKVVTLRDPCMRLWPVLY--HESLKFVGFTGGWEDFSKANNLQKGDTCQFEFHKAPEPTLNVQIFR 701
                     556667789***************..*******************************99999999*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.153105198IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-15107198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-17107200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-13107185No hitNo description
SMARTSM010192.0E-6108198IPR003340B3 DNA binding domain
PfamPF023622.8E-9116187IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73606702IPR003340B3 DNA binding domain
SMARTSM010190.0044611702IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-15618701IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-14619701No hitNo description
Gene3DG3DSA:2.40.330.104.9E-14621701IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-11623701IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MPPKPWLQEE EEERRRKEWR RAQRREILLE KFWRDSREGK GVGRKGNEEV GKARKKRMQS  60
PKKQKLMCMD YSNKCLRTHG DNASSSSLSP PAALPPTPPT TTTIALSFFK IMLGDFTELL  120
FIPPKFAPAL GGLIDQNICL QNSFGQRWRV KIALVHGSLA FAHGWRNFVL DHVIKVGELL  180
IFKHVSKRVI SAQIFATSSC ERLHFCEKSK KVIRKRKKID ELFPDNLCSN KNHSSCKASE  240
EKQYFVDDDS LTKERIVRAG PCDLSGITIA ESNCIAKGVG EGISPSDKSH HNNSSMLQIE  300
SRVNRTETIC HLNDENSTRM PQAGEDSAHN LSNISPKGTS IADCSEARAK TRCESSSAII  360
THPLTESMID FTEGPNGTEK DQMGKGGMHK TNAIDLSEPG ITYGKVDSVK ITENSFSVSQ  420
ASNTNYTEND HVNLSTSKEF LCKNHSEEGI CYDVDEDSMD KLGVCRDAFT DLCYNKKDAT  480
VLQADKAATK RKYGSCSENN HDIPVNALVM NSINDDMKNL RSFPEDTQSG GKMENAPPGA  540
DGNASQSMIN LPAFHKDLDI MKDSGVVLHS FLQVDEENVT TYSEGKCLKA VKTEIVDPVD  600
LPTLNYGNIR FSISVNAWSW LELPDRLPFR LGKKRYERKV VTLRDPCMRL WPVLYHESLK  660
FVGFTGGWED FSKANNLQKG DTCQFEFHKA PEPTLNVQIF RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213217RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932291.10.0B3 domain-containing protein Os02g0598200-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-08B3 family protein