PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932368.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 833aa    MW: 97041.3 Da    PI: 9.079
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932368.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.13.4e-1465148191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                     +fYn+YA+++GF ++++ s++++        + +C k  kr+ ++++   +  +r++  t+C a lkv++ + dg +++++++l+HnHel+p
  XP_010932368.1  65 EFYNRYAQHLGFATKIKGSSRNRA-----YIQIMCWKGRKRDIRRTD---ALAPRPTLYTSCPALLKVRLCRfDGMYHLKEVVLDHNHELNP 148
                     6****************9999843.....55899****999999877...999******************99****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1165148IPR004330FAR1 DNA binding domain
PfamPF105518.9E-28252345IPR018289MULE transposase domain
PROSITE profilePS509669.878539575IPR007527Zinc finger, SWIM-type
SMARTSM005757.4E-7550577IPR006564Zinc finger, PMZ-type
PfamPF044341.1E-4551572IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 833 aa     Download sequence    Send to blast
MGRRPAAAQR DGRVDNIRPK TKKKSRRKAI SIPDPPPAVE EPGSSREVIA PKTGMKFKTL  60
EELCEFYNRY AQHLGFATKI KGSSRNRAYI QIMCWKGRKR DIRRTDALAP RPTLYTSCPA  120
LLKVRLCRFD GMYHLKEVVL DHNHELNPLR MHFYRDENMV GAGVKKREAH VAAAREESLA  180
LVEREWMSSV DEIQWLKLEK EDAEALHQFF RRMQANNSNF FYLIDIDGEG HLRNVFWADG  240
RSRAAYRYFG DVILLDTSCL RSKYNVPLAT FIGVNHHGQP LLVGCGLLSN ENTRTYIWLF  300
QAWLSCMSGQ SPNAIITDQG KAIQEAVAQI FPGCPHRQCL WQIMKRIPNK LEGCAEYKEI  360
KRAFKKTVYD SLSAHEFEQE WSKMLEKHSL VYNEWLRLLY QDRYHWAPIF VKDKFWAGLS  420
ATRRGENMDF FFDGHLESNT SLKQFLDKYE MAMESKYETE ALADFESFHK VPPLFTQFYM  480
EEQLSKIYTI DIFVKFQDEI KALVYCHPSL IRKDGLMYIF EVRERIRGKE SKMMEQKNYE  540
VMFNANDQEV RCICHSFQYR GILCRHALSV FNFQDIDEIP SRYIVERWKK DFKGVHAVVC  600
PPYEMVANGP MERYENLYKH CLKLAEVGTK TDDKYQFALK VINEAMEKLL EDNFICKGKQ  660
VKIVMTEPTI DCNNVDSSAI NGNKDMGKDI EEIHDPKEPR KKGRKRRKEP AETLNNNKEK  720
EQVNQTNAPV FLHPPLPLSY QHPFANPSWA QWSFQHMNQV QPSNLIYYAA APVNHPQFGL  780
FLNRDQLGDP RFSNSSGIPW SSQQILEKTQ NPVALPGPKK KRKRKNDVVE LSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1703708RKRRKE
2818824KKKRKRK
3819824KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932368.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLA0A2H3ZMG20.0A0A2H3ZMG2_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_008784351.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-145FAR1-related sequence 6