PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932381.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 739aa    MW: 84309.6 Da    PI: 8.3363
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932381.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.31e-134278135
            GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C nCg +   T+++Rrgp+g +tLCnaCG+ ++k ++
  XP_010932381.1 42 CLNCGISAkfTSHMRRGPEGRRTLCNACGIAWKKGKQ 78
                    899*988788************************987 PP
2FAR183.43.7e-26112197188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     +fYn+YA ++GFs+rk    ks  ++ + +rt+vCs+eg+r+++k + ++ +r+r+ tr+gC a++++k++ +gk++vt+++ +HnH+
  XP_010932381.1 112 EFYNRYAGMIGFSIRKGWLDKS-SEKVTRSRTLVCSREGFRKDKKGA-KEVKRPRPDTRIGCPARMTIKLQPTGKYRVTEFVPDHNHQ 197
                     6********************9.666799**************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.3E-83689IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.61E-93886No hitNo description
Gene3DG3DSA:3.30.50.102.9E-114179IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.86E-84179No hitNo description
PROSITE patternPS0034404269IPR000679Zinc finger, GATA-type
PfamPF003202.8E-114278IPR000679Zinc finger, GATA-type
PfamPF031012.8E-23112197IPR004330FAR1 DNA binding domain
PfamPF105512.2E-31321415IPR018289MULE transposase domain
PROSITE profilePS509669.854589636IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-5590634IPR007527Zinc finger, SWIM-type
SMARTSM005753.6E-4611638IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MNATVCGGGS GRGDPQMPYG QDQDQEVHHN SGDDGLEGPP RCLNCGISAK FTSHMRRGPE  60
GRRTLCNACG IAWKKGKQRK VLEYDAPSQD VANSNMVPAI DMEFESEDKA YEFYNRYAGM  120
IGFSIRKGWL DKSSEKVTRS RTLVCSREGF RKDKKGAKEV KRPRPDTRIG CPARMTIKLQ  180
PTGKYRVTEF VPDHNHQPAP PSAMHMLRSQ RITTEVQAAE ADLSDDAGTT PKSTKEPAGR  240
QVGGLRNIRF LPADYKIGLR SKRMKAMQTG DAEAVLKYLQ SMQLCDRSFF YAIQVDEDDK  300
LTNIFWADSK SVTDFNYFGD VVCLDTTYKA NGYGRPFAPF LGMNHHKQIV IFGAALLYSE  360
TTESFKWLLE TFKLAMHGKQ PKTILTDNSV AISNAIAEVW PGTSHRLCMW QFYQNANKHL  420
NHVFQASKTF AKDFSRCIYD YEDEEEFLLE WRTMLEKYDL RNNEWLAKLF EEREKWALVY  480
GRQIFCGDMG RTLQNANINS VLKKYLSPQL DLLSFFKQYE RVLDEHRYAE LQADFNASQS  540
FPRIPPSKML RQAANLYTPT VFEMFRKEFE IFMDCMLYSC GEVGTISEFK ITVGEKSKEH  600
LVRLDSSDCS VACSCKKFEF MGIQCGHVLK VLDVRNIKEL PERYFLRRWR RDAKGGTEKD  660
PQQVASDGDP RSPMTTSMHM LSSSYAHHQG FHGMTQLNQE SPLSGLHQQQ FNGGTQLGQG  720
YSTLDMQSRQ IFGSSQLNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932381.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_010932382.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2H3XIW70.0A0A2H3XIW7_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008784343.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-134FAR1-related sequence 5