PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932383.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 644aa    MW: 74110.4 Da    PI: 8.4421
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932383.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.73e-2617102188
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                     +fYn+YA ++GFs+rk    ks  ++ + +rt+vCs+eg+r+++k + ++ +r+r+ tr+gC a++++k++ +gk++vt+++ +HnH+
  XP_010932383.1  17 EFYNRYAGMIGFSIRKGWLDKS-SEKVTRSRTLVCSREGFRKDKKGA-KEVKRPRPDTRIGCPARMTIKLQPTGKYRVTEFVPDHNHQ 102
                     6********************9.666799**************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2317102IPR004330FAR1 DNA binding domain
PfamPF105511.8E-31226320IPR018289MULE transposase domain
PROSITE profilePS509669.854494541IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-5495539IPR007527Zinc finger, SWIM-type
SMARTSM005753.6E-4516543IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MVPAIDMEFE SEDKAYEFYN RYAGMIGFSI RKGWLDKSSE KVTRSRTLVC SREGFRKDKK  60
GAKEVKRPRP DTRIGCPARM TIKLQPTGKY RVTEFVPDHN HQPAPPSAMH MLRSQRITTE  120
VQAAEADLSD DAGTTPKSTK EPAGRQVGGL RNIRFLPADY KIGLRSKRMK AMQTGDAEAV  180
LKYLQSMQLC DRSFFYAIQV DEDDKLTNIF WADSKSVTDF NYFGDVVCLD TTYKANGYGR  240
PFAPFLGMNH HKQIVIFGAA LLYSETTESF KWLLETFKLA MHGKQPKTIL TDNSVAISNA  300
IAEVWPGTSH RLCMWQFYQN ANKHLNHVFQ ASKTFAKDFS RCIYDYEDEE EFLLEWRTML  360
EKYDLRNNEW LAKLFEEREK WALVYGRQIF CGDMGRTLQN ANINSVLKKY LSPQLDLLSF  420
FKQYERVLDE HRYAELQADF NASQSFPRIP PSKMLRQAAN LYTPTVFEMF RKEFEIFMDC  480
MLYSCGEVGT ISEFKITVGE KSKEHLVRLD SSDCSVACSC KKFEFMGIQC GHVLKVLDVR  540
NIKELPERYF LRRWRRDAKG GTEKDPQQVA SDGDPRSPMT TSMHMLSSSY AHHQGFHGMT  600
QLNQESPLSG LHQQQFNGGT QLGQGYSTLD MQSRQIFGSS QLNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16569KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932381.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_010932382.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2H3XIW70.0A0A2H3XIW7_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008784343.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-135FAR1-related sequence 5