PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932626.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24348.8 Da    PI: 9.5997
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932626.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.72.4e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng++KKA+EL +LCdaev + ifsstg+ly+++s
  XP_010932626.1 10 RIDNSTSRQVTFSKRRNGLFKKAKELAILCDAEVGLAIFSSTGRLYDFAS 59
                    8***********************************************86 PP
2K-box89.37.2e-3079170798
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + +++++++ +q+e+a L+++++nLq+++R+llGe+L+ Ls+k+Lq+Le+qLe sl+ iR kK++ll+++i+el +k + +++en +L kk+
  XP_010932626.1  79 VMNASSETKFWQREAASLRQQLHNLQESHRQLLGEELSGLSVKDLQNLENQLEMSLRGIRMKKDQLLIDEIQELNRKGNLIHQENIELYKKV 170
                     3378999*********************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.244161IPR002100Transcription factor, MADS-box
CDDcd002657.38E-44277No hitNo description
SuperFamilySSF554556.02E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014867.3E-2983170IPR002487Transcription factor, K-box
PROSITE profilePS5129716.03986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLFK KAKELAILCD AEVGLAIFSS TGRLYDFAST  60
SMKSVIERYN KTKEENHLVM NASSETKFWQ REAASLRQQL HNLQESHRQL LGEELSGLSV  120
KDLQNLENQL EMSLRGIRMK KDQLLIDEIQ ELNRKGNLIH QENIELYKKV YAMRGVNGID  180
KGPITPYGFN VTEDANISIH LELSQPQLQT DAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-20174174MEF2C
5f28_B9e-20174174MEF2C
5f28_C9e-20174174MEF2C
5f28_D9e-20174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019708871.11e-157MADS-box transcription factor 23 isoform X4
RefseqXP_019708872.11e-157MADS-box transcription factor 23 isoform X3
SwissprotQ6EP491e-105MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A3Q0I8Z41e-143A0A3Q0I8Z4_PHODC; MADS-box transcription factor 23-like isoform X2
STRINGXP_008800745.11e-141(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-99AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]