PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932686.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YB
Protein Properties Length: 216aa    MW: 23539.1 Da    PI: 5.5557
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932686.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.69.9e-5530126197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrf+Pianv+rim+kvlP++akis+daket+qecvse+isf+tsea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yreleg
  XP_010932686.1  30 VREQDRFMPIANVIRIMRKVLPTHAKISDDAKETIQECVSEYISFITSEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLSLYLQRYRELEG 124
                     69********************************************************************************************9 PP

           NF-YB  96 ek 97 
                     ++
  XP_010932686.1 125 DH 126
                     96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-5126129IPR009072Histone-fold
SuperFamilySSF471132.02E-3833131IPR009072Histone-fold
PfamPF008085.4E-2636100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-186482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.6E-1883101No hitNo description
PRINTSPR006152.6E-18102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAGSGTGGDH ANYGGSSDGN PAAAAGQCSV REQDRFMPIA NVIRIMRKVL PTHAKISDDA  60
KETIQECVSE YISFITSEAN ERCQREQRKT ITAEDVLWAM SKLGFDDYIE PLSLYLQRYR  120
ELEGDHRGSI RGEPLPTIRH RSPNPSTDVV PFFPQPPPPS FVVPPPSGPS HLNHLYGDGA  180
GGYYYGMYGG GDGSGASTSQ DPPMPGFDHS YAPYKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A5e-6029121597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932686.31e-160nuclear transcription factor Y subunit B-1-like
TrEMBLA0A3Q9X1G51e-158A0A3Q9X1G5_ELAGV; Leafy cotyledon 1
STRINGXP_008805507.15e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.21e-64nuclear factor Y, subunit B6