PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010932688.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 236aa    MW: 27105.7 Da    PI: 7.3054
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010932688.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-091641982155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++++  LA+++gL+++q+ +WF N+R ++
  XP_010932688.1 164 KWPYPSESQKLALAQSTGLDQKQINNWFINQRKRH 198
                     579*****************************885 PP
2ELK40.17.6e-14118139122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK qLlrKYsgyLgsLkqEF+
  XP_010932688.1 118 ELKGQLLRKYSGYLGSLKQEFL 139
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037891.3E-10118139IPR005539ELK domain
SMARTSM011881.2E-7118139IPR005539ELK domain
PROSITE profilePS5121311.174118138IPR005539ELK domain
PROSITE profilePS5007112.908138201IPR001356Homeobox domain
SMARTSM003893.4E-13140205IPR001356Homeobox domain
SuperFamilySSF466898.13E-20140215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28143203IPR009057Homeodomain-like
CDDcd000865.83E-13150202No hitNo description
PfamPF059204.1E-17158197IPR008422Homeobox KN domain
PROSITE patternPS000270176199IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGGLSIESLA RDCIPSRFVH NKSSSIGDSS SNLHVPIHVC HDSRAKILFL NTNGAHDSPH  60
ERCIMIIASD LILLYVNTIV ESYTPNVVYG EQLERNGSSD EEFDACENYV DPQAEDRELK  120
GQLLRKYSGY LGSLKQEFLK KRKKGKLPKE ARQQLLDWWN RHYKWPYPSE SQKLALAQST  180
GLDQKQINNW FINQRKRHWK PSEEMQFVVM DAAHPHYFMD NSLGNSFPLD CAPALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133142LKQEFLKKRK
2139143KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029122787.11e-109homeobox protein knotted-1-like LET6
SwissprotO222992e-80LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA5H2373e-92A5H237_ELAGV; Class I KNOX-like 1 protein
STRINGXP_008795979.11e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2107357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.18e-71KNOX/ELK homeobox transcription factor