PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010932880.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 259aa MW: 29106.3 Da PI: 9.9891

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010932880.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.1	2.7e-07	104	148	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++l ++ K +K +i++ A ++++L XP_010932880.1 104 HMMRERQRREKLSQSYADLHSMLSSR-----SKGDKNSIVQSAAVCVREL 148 889**********************7.....4677777777776666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.115	99	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-10	102	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.86E-5	103	149	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.8E-8	103	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-4	104	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-4	105	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MESFASFQEE LFHGDNMPYW AFSPGLAFDL IAAVPEPALV EPPVVLRSAF TLYTRRENEH 60 MVGDSSSGAG GRRNIHRRVI DMLRRIPQAK EECKGVEMSR GFRHMMRERQ RREKLSQSYA 120 DLHSMLSSRS KGDKNSIVQS AAVCVRELKV VKDQLQRRNE ELKSMILGSN GRTEEAKVNF 180 RVANPSSAID SLIGALRCLK SMDVKARAIR SHLSGHELSA TMSIDTKVAA GEVERAVEGA 240 LREAEEKLLR PFPRTHGWS

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029122929.1	0.0	transcription factor BHLH148
Swissprot	Q75KV9	2e-67	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A2H3X3S2	1e-155	A0A2H3X3S2_PHODC; transcription factor BHLH148-like
STRING	XP_008777863.1	1e-156	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5940	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	3e-30	bHLH family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]