PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933052.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 293aa    MW: 34310.7 Da    PI: 9.3978
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933052.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.31.5e-2645126186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e+++Li++r ++e++++ +k++k+ We v+ +mre+g++rsp+qCk+kw+nl +ryk  ++++ +    + ++cp+f++l+
  XP_010933052.1  45 QWSPEETRDLIAIRGDLERDFSVSKRNKTMWELVATRMREKGYRRSPEQCKCKWKNLVNRYKGKETSDPE----TGKQCPFFEELH 126
                     7**************************************************************9999997....4678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.003442104IPR001005SANT/Myb domain
CDDcd122032.36E-2444109No hitNo description
PfamPF138371.5E-2444127No hitNo description
Gene3DG3DSA:1.10.10.605.4E-545103IPR009057Homeodomain-like
PROSITE profilePS500907.93346102IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MMRGGSAEGM GMMGPGGPLR LNPAAEAVGT SGGAGGRGKE DKVPQWSPEE TRDLIAIRGD  60
LERDFSVSKR NKTMWELVAT RMREKGYRRS PEQCKCKWKN LVNRYKGKET SDPETGKQCP  120
FFEELHAVFT ERARNMQREL LESESGASHS KKKLKKLGAD KSSDELSEDD EDSDGERLTK  180
TRKRKIDRGP QQRATDKSRA TGSSIYDLLR DFLQQQQRME VQWQEMMERR TQERLVFEQE  240
WRQSMEKLEK ERLMLEQAWW EREEQRRRRE EMRAEKRDAL LTTLLNKFLQ EDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A3e-1346116777DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933052.10.0trihelix transcription factor GT-3b
TrEMBLA0A2H3YS041e-125A0A2H3YS04_PHODC; trihelix transcription factor GT-3b-like
STRINGXP_008802948.11e-126(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.18e-33Trihelix family protein