PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933134.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 215aa    MW: 23907.5 Da    PI: 5.7181
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933134.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-055173123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_010933134.1 51 YTCSFCKREFRSAQALGGHMNVH 73
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-64877No hitNo description
SMARTSM003550.00385173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.245178IPR007087Zinc finger, C2H2
PfamPF139121.4E-65174IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MERCGRSSRD NNINSSNNNK VREPWGYSQV GKGNTPCSGL IGGFSWPPRS YTCSFCKREF  60
RSAQALGGHM NVHRRDRARL RQSPPWDPPL SNPNPNPNPN LPGTFIPNLN VSPSIASDPK  120
LSPRTHRFPS LLSPLTHFSS SSSSIYSTEL FCSRGGDLRG METVEGVEEL RDIVEEGTDD  180
VLRKETELVR LDLEIGTCGD SEEDDLDLEL RLGFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-144673229superman protein
2l1o_A5e-144673229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933134.11e-156transcriptional regulator SUPERMAN-like
TrEMBLA0A2H3Y6W11e-116A0A2H3Y6W1_PHODC; transcriptional regulator SUPERMAN-like
STRINGXP_008794310.11e-117(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-24C2H2 family protein