PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933167.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 286aa    MW: 30526.6 Da    PI: 8.6158
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933167.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.8e-19200234135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C t +Tp+WR gp+g+ktLCnaCG++y++ +l
  XP_010933167.1 200 CRHCETEDTPQWRAGPEGPKTLCNACGVRYKSGRL 234
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.084194230IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-18194244IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-14196257No hitNo description
Gene3DG3DSA:3.30.50.107.2E-15198232IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.68E-14199256No hitNo description
PROSITE patternPS003440200225IPR000679Zinc finger, GATA-type
PfamPF003203.7E-17200234IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MRLVASGVRD QSEHWVVSDM AMVGPLEEAP EGCLSADDLL LLDLPCDPGL DAPLHRRNPN  60
PMAPSAAGGL QDQSLLGILD SADIPAVDGF PGLAAEEGGG GGQEEEELEW LLNKDAFPAL  120
ETSFEIPPTY SRSSGSGGTG SSGSAASRAP PARTSPVLVL AGAVTFRVPV RPRSKGRRRR  180
VLAGLSPAPV PREAKERRRC RHCETEDTPQ WRAGPEGPKT LCNACGVRYK SGRLVPEYRP  240
AASPTFSAAI HSNSHRQVME MRRRNLARGR RSGRLPPVAL VARPAL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933167.10.0GATA transcription factor 1
SwissprotO826329e-34GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A2H3ZER23e-92A0A2H3ZER2_PHODC; GATA transcription factor 1-like
STRINGXP_008812399.15e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-34GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]