PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010933290.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TCP

Protein Properties

Length: 246aa MW: 25620.6 Da PI: 10.526

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010933290.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.1	3.8e-39	34	132	3	107
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ a s + s+s ++sa+ XP_010933290.1 34 VKKAPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStLATSLRHSTS-------SSSAPL 121 79******************************************************************88865555555555.......333333 PP TCP 97 skksqksaasa 107 +k+q+++++ XP_010933290.1 122 DHKPQHHPSAP 132 34444444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.992	39	93	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.4E-34	39	128	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSGVLTGHSH QRQQMTPGNN DNGNGNGNGV PLVVKKAPSK DRHSKVDGRG RRIRMPIVCA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTLATSL RHSTSSSSAP 120 LDHKPQHHPS APFILGKRLR ADDDDDDSSA TKNGGVGMGP MGGFWAVSAR QDFGQVWSFA 180 APEMVVPPGS LSGSFAVAAQ PVGKASAARG GNYLPMVQGH LNLLASLSGS PAAASAAGRS 240 TEDEPR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010933290.1	1e-180	transcription factor TCP7
Swissprot	Q9FMX2	6e-77	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2H3YDJ6	1e-107	A0A2H3YDJ6_PHODC; transcription factor TCP7
STRING	XP_008797207.1	1e-108	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-49	TCP family protein