PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933377.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 240aa    MW: 27505.9 Da    PI: 8.1456
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933377.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.26e-18107161256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee+F+++ +++ +++  +Ak+l+L  rqV vWFqNrRa+ k
  XP_010933377.1 107 RKKLRLSKEQSCYLEECFKEHTTLNPKQKLAIAKRLNLLPRQVEVWFQNRRARTK 161
                     678899***********************************************98 PP
2HD-ZIP_I/II113.11.8e-36107194188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     +kk+rlskeq+  LEe+F+e+++L+p++K ++a++L+l prqv+vWFqnrRARtk+kq E+dy++L ++++ l+een++L+ke +eL+
  XP_010933377.1 107 RKKLRLSKEQSCYLEECFKEHTTLNPKQKLAIAKRLNLLPRQVEVWFQNRRARTKLKQSEVDYKYLIQWCEYLTEENRMLRKEIQELK 194
                     69*************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-1779164IPR009057Homeodomain-like
SuperFamilySSF466898.55E-1894164IPR009057Homeodomain-like
PROSITE profilePS5007115.969103163IPR001356Homeobox domain
SMARTSM003891.2E-14105167IPR001356Homeobox domain
CDDcd000861.61E-14107164No hitNo description
PfamPF000463.6E-15107161IPR001356Homeobox domain
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
SMARTSM003406.0E-14163206IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDIDSSMRNG DWGGNQSLTS QEPKLMDKDG GQPTIHPSLQ LELKLPWSTE TESGDEAKSR  60
GGVKGPTGSD DPCDDTKPSP SASHRVIAER GSQGRHNDSE GDGGRGRKKL RLSKEQSCYL  120
EECFKEHTTL NPKQKLAIAK RLNLLPRQVE VWFQNRRART KLKQSEVDYK YLIQWCEYLT  180
EENRMLRKEI QELKAFKSPL QNVHHYKQQT MLTMCPSCQH AIFLQKIDSF HDTADRENHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110RGRKKLR
2155163RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933377.10.0homeobox-leucine zipper protein HAT4 isoform X3
SwissprotA2Z1U11e-49HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
SwissprotQ67UE27e-49HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A3Q0I6U61e-125A0A3Q0I6U6_PHODC; homeobox-leucine zipper protein HAT4-like isoform X2
STRINGXP_008798014.11e-124(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.18e-44homeobox protein 2