PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933422.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 230aa    MW: 26144.5 Da    PI: 8.2513
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933422.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-14119199183
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+ +lt ++v + ++l+lp k ae++   + ++   l++ d es r W++++  ++ ++ + l +GW+ Fv+++ Lk+gD+++F+
  XP_010933422.1 119 FCLKLTCNNVQSWKCLILPTKSAERFfPDV-PS---LMFWDqESRRWWNFEYFRSRDRQCFQLVSGWSTFVEEKALKTGDTLIFS 199
                     677788888999999***********6434.33...666663788999****5566665599**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-16112205IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-16115204IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-11118198No hitNo description
PROSITE profilePS5086310.574119220IPR003340B3 DNA binding domain
PfamPF023625.5E-12119200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MASLPNNLHG FSWVGVKEEE EDPGFHMSSS LRQFPTTRQE GRHAMMVAST VSNSFTRPSS  60
SRARGVNAST SGLPTPHCNT VFQQNTTHIH RHRSSTLHPH SAIPIGPPSD DGASANTLFC  120
LKLTCNNVQS WKCLILPTKS AERFFPDVPS LMFWDQESRR WWNFEYFRSR DRQCFQLVSG  180
WSTFVEEKAL KTGDTLIFSI FVDGDILQNS YYMIDVRRAV KLFGTVIHID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664259.11e-46B3 domain-containing protein Os02g0683500-like
TrEMBLA0A3Q0IBP32e-45A0A3Q0IBP3_PHODC; B3 domain-containing protein Os02g0683500-like
STRINGXP_008803590.17e-64(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3754523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.13e-10B3 family protein