PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933441.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 193aa    MW: 21451.2 Da    PI: 6.2266
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933441.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-1583171599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++s + +  +l +p++f++     + es+  ++ +   r+We++++ +++ +r  + +GWk+F+ +n+Lk gD +vF+l+++++ ++ v+++r 
  XP_010933441.1  83 VSKSQTQSPFQLGVPRRFCSLL---PSESVS-VFLSCGRRTWEMRYCGDGSLKR--FDRGWKNFAIDNNLKIGDGCVFELIDHKNMKFQVRILRG 171
                     56777888899********444...445544.5577799*******66666666..9************************88888889999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.63E-1974170IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-2075170IPR015300DNA-binding pseudobarrel domain
CDDcd100175.63E-2277170No hitNo description
SMARTSM010192.8E-1279172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.87279172IPR003340B3 DNA binding domain
PfamPF023621.8E-1383171IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MMDHSISGSN GQQRHCRIPL EEQCLSQESC NHANQYPVAN NGKNGESSVG SHAPQPIQTE  60
PIIPEEQDEV VPLSGNPYFT CIVSKSQTQS PFQLGVPRRF CSLLPSESVS VFLSCGRRTW  120
EMRYCGDGSL KRFDRGWKNF AIDNNLKIGD GCVFELIDHK NMKFQVRILR GEIPCPLVDG  180
AGGQSHDSPI MID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933441.11e-143B3 domain-containing protein Os04g0386900 isoform X1
TrEMBLA0A2H3X1121e-102A0A2H3X112_PHODC; B3 domain-containing protein Os04g0386900-like
STRINGXP_008776698.11e-103(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-10B3 family protein