PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933571.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 472aa    MW: 52079.9 Da    PI: 7.4794
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933571.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.88.2e-15741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_010933571.1  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                    99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-10445No hitNo description
CDDcd002024.97E-14653No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003201.6E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-11741IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGKHGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLTNYTPMHA REPIDSEELK  60
VTKAKSISLK SKEQKLHKKK QSITTLGSER EIPYSDQNFR KIADGDTSNR SSSGSAISYS  120
ESCAHFGTTD ASDMTGSAQS NVWDPLVPSK KRTGITRPKS SSVEKLTKDL YTILHEQQSS  180
YQGSSEGDLL YESRTPMGSF EIGYGSVLIR HPKSKSVEEE SEASSLPEDN KSYIINEAYS  240
GIASFHVHSE NKGILSDSGN DKKSTAQVLQ ENGRRDKFSH DKLQILRDRE SPLCSTDLQD  300
VKCKQMTEGK GMATRPKFPG FSDLASLKRM RDGQNQNYPE LKETMRSPKR MCKSGSTNLL  360
SGNQPQLNSC DAGSKLTDDA DDFIDNEEAC FSPRSFFASP PDRVSMVDDS TDHDLLLDVP  420
CNASFPEAEL LYHPWKQKIA SSSSPSEGGV AQGEESRSNF PSSFSNKLPK NR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933571.10.0GATA transcription factor 26 isoform X2
SwissprotQ8W4H14e-71GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2H3XNC00.0A0A2H3XNC0_PHODC; GATA transcription factor 27-like
STRINGXP_008786183.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.34e-62GATA transcription factor 26