PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010933634.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

ERF

Protein Properties

Length: 261aa MW: 27962 Da PI: 6.1614

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010933634.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.5	3.2e-18	92	141	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a++ ++g XP_010933634.1 92 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALTIKG 141 69**998.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.787	92	149	IPR001471	AP2/ERF domain
Pfam	PF00847	3.5E-12	92	141	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-21	92	150	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.6E-32	92	150	IPR001471	AP2/ERF domain
SMART	SM00380	7.9E-37	92	155	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-10	93	104	IPR001471	AP2/ERF domain
CDD	cd00018	7.75E-31	93	151	No hit	No description
PRINTS	PR00367	1.2E-10	115	131	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MEEPPTHQCG EANTSSSSSS SCTTTTTSSS SSSSSSSFPT TTSLSPNASP EPPQDSKIHK 60 KAAKSSSKRG AEAAGTTTGE AKKRSKDGKH PTYRGVRMRN WGKWVSEIRE PRKKSRIWLG 120 TFATAEMAAR AHDVAALTIK GQSAHLNFPE LACKLPRPAT ASPKDIQAAA ALAAAATFAD 180 CIHPSCRDDD VIAAAASPSP GPPTPSSYND DIDALFDLPD LLLDLRDEFC YYSPTWLPPP 240 EEDHDTLGFR LEEEPPFLWG V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-18	84	149	6	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010933634.3	0.0	LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	2e-53	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2H3ZTG3	2e-90	A0A2H3ZTG3_PHODC; ethylene-responsive transcription factor ERF039-like
STRING	XP_008796155.1	7e-87	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP159	35	354

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35700.1	1e-44	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]