PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933668.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 364aa    MW: 39022.9 Da    PI: 5.7485
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933668.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044224246123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+k+F++   L  H  +H
  XP_010933668.1 224 YQCGTCKKVFRSYQALGGHRASH 246
                     9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.767330IPR007087Zinc finger, C2H2
PfamPF139122.4E-4325IPR007087Zinc finger, C2H2
SMARTSM003550.32325IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280525IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286224246IPR007087Zinc finger, C2H2
PfamPF139122.9E-10224248IPR007087Zinc finger, C2H2
SuperFamilySSF576674.8E-7224246No hitNo description
SMARTSM003550.098224246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
SuperFamilySSF576674.8E-7274301No hitNo description
PfamPF139128.7E-10278302IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39279306IPR007087Zinc finger, C2H2
SMARTSM003550.54279301IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEHTCKLCFR RFANGRAMGG HMRSHVTSAT PPVKAQLLHD SSASSTSASS QQAPAVAPEE  60
VEERGGDEDG KGMSFCYSLR ENPRKSFRLV DPEFSSFAAV DAGSSSVVQD GESETESSRA  120
PPSHGRRSKR PRPAPLPPPE HPEPGPASSV SDTTTEEDVA LSLMMLSRDF WTKTKSEEED  180
DDEKQRSDGW EDDDGAAEEK GQIVAGRLQP PPPSPASARG RSKYQCGTCK KVFRSYQALG  240
GHRASHKKSG VACITAVQAQ IHDVESSEGN ADREANKVHE CSFCFRVFSS GQALGGHKRS  300
HLTSSATATT ITISSPAPPP PPPSSGITKF GESFSFIDLN LPAPLEDDAE LSAVSDAEFI  360
SQLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933668.10.0zinc finger protein ZAT9-like
TrEMBLA0A2H3YBR40.0A0A2H3YBR4_PHODC; zinc finger protein ZAT4-like
STRINGXP_008796144.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11214410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-33C2H2-like zinc finger protein