PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933715.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family YABBY
Protein Properties Length: 229aa    MW: 25134.4 Da    PI: 7.3111
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933715.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY234.13.3e-72171916170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...........lleelkveeenlksnveke 89 
                      seq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++      a +  l++ +  +               l +++ +l+ n+++ 
  XP_010933715.1  17 PSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLGLGHPFLAPsphnlldeipcPPPSLLMDQPSLNNNNSNG 111
                     68****************************************87766654444444456666655678866665552233444555555555555 PP

           YABBY  90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +++++++++    + ++ee+p+ + v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  XP_010933715.1 112 NHNHNHNTMAP-ARGTEEELPQNQVVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 191
                     55555555544.67789999*9999******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-7217191IPR006780YABBY protein
SuperFamilySSF470951.19E-7135184IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.9E-4140183IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSSSSAAFSL DQLSPPPSEQ LCYVHCNFCD TVLAVSVPCS SLFKTVTVRC GHCTNLLSVN  60
MRGLLLPAAN QLGLGHPFLA PSPHNLLDEI PCPPPSLLMD QPSLNNNNSN GNHNHNHNTM  120
APARGTEEEL PQNQVVNRPP EKRQRVPSAY NRFIKDEIQR IKAGNPDITH REAFSAAAKN  180
WAHFPHIHFG LMPDQGLRKN SVRQQEGEDV LLKDGFYAAA AANMGITPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933715.11e-170protein YABBY 4
SwissprotQ01JG27e-92YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF07e-92YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A2H3YCT91e-147A0A2H3YCT9_PHODC; protein YABBY 4-like
STRINGXP_008796843.11e-148(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.16e-83YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]