PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933757.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 418aa    MW: 44292.7 Da    PI: 7.6604
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933757.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.9e-19338372135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  XP_010933757.1 338 CSHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRL 372
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-15332386IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-14334395No hitNo description
PROSITE profilePS5011411.451336368IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14336370IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.81E-14337379No hitNo description
PROSITE patternPS003440338363IPR000679Zinc finger, GATA-type
PfamPF003201.0E-16338372IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MTHQTPISSS SPLVSFNSPT TTTTNTTTSS SSLLCCPLQS RSHFDSTQGR RMEALKSSLR  60
WEPSAPSGQQ HHQGLLADDQ PWAALERGNI LGDGFSVDDL LDLGGFAEPE KETEEKPETA  120
AGSTEADENS NSLLSSSSAL SFQPRPPSDI SLPMSPLPLM AHDVEELEWV SLIIDDSLSE  180
FPPSCSDVVL PFPPPLPKPQ AVSPPENLPA PLLSPTVCAL STEALVPVKA KRSKRSRSAG  240
AGWSLSGLPP FTNSSASSSS TTTTTTSSSS SCCSSSSSFD SYLIYDPTGA GVYNLLDGNP  300
LPLPPLPSKK QKTKKRGRKP KPPQAASAAS GGGGERRCSH CGVQKTPQWR AGPLGAKTLC  360
NACGVRYKSG RLLPEYRPAC SPTFVTDVHS NSHRKVLEMR RKKEAELVAA AAPPVPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933757.10.0GATA transcription factor 5
TrEMBLA0A2H3YD550.0A0A2H3YD55_PHODC; GATA transcription factor
STRINGXP_008796881.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-40GATA transcription factor 5