PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933776.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25190.2 Da    PI: 4.7754
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933776.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.4e-203083356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k+++f++eq++ Le+ Fe++ ++  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  XP_010933776.1 30 KKRRFSEEQIKSLESIFESQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 83
                    5679*************************************************9 PP
2HD-ZIP_I/II120.68e-3930118290
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     kkrr+s+eq+k+LE+ Fe++ kLep++K +la+eLglqprqva+WFqn+RAR+k+kqlE++y+aLk++yd l ++ e+L+ke++ L ++
  XP_010933776.1  30 KKRRFSEEQIKSLESIFESQAKLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLEREYAALKANYDVLLSSVESLKKEKQILINQ 118
                     9***********************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-201187IPR009057Homeodomain-like
PROSITE profilePS5007117.8962585IPR001356Homeobox domain
SMARTSM003892.2E-172889IPR001356Homeobox domain
CDDcd000863.35E-163086No hitNo description
PfamPF000462.8E-173083IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-193192IPR009057Homeodomain-like
PRINTSPR000317.6E-65665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000317.6E-66581IPR000047Helix-turn-helix motif
PfamPF021831.2E-1385126IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
METVDYSAAE EAESSYISMD PLLTKSRSDK KRRFSEEQIK SLESIFESQA KLEPRKKLQL  60
AKELGLQPRQ VAIWFQNKRA RWKSKQLERE YAALKANYDV LLSSVESLKK EKQILINQSQ  120
KLTELLNKPS EASSNDGDSN CSNGKREEDA RPCLLVCSGD EEKNLSFFNQ KEAEYLYMRE  180
PESGYLTSIE QPCDFNCSSS PEQCCTTPSE WWESWPLTG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933776.11e-158homeobox-leucine zipper protein ATHB-12
SwissprotQ651Z51e-48HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH351e-48HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLA0A2H3ZA241e-129A0A2H3ZA24_PHODC; homeobox-leucine zipper protein ATHB-12-like
STRINGXP_008810697.11e-130(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.16e-45homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]