PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933895.1
Common NameCBF3
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 210aa    MW: 23202.9 Da    PI: 4.8607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933895.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-174797155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + ykGVr++    +Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  XP_010933895.1 47 PVYKGVRRRN-ADKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAMALRG 97
                    68*****887.8******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-134797IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3148107IPR001471AP2/ERF domain
SMARTSM003803.4E-2648111IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-2148107IPR016177DNA-binding domain
PROSITE profilePS5103221.93148105IPR001471AP2/ERF domain
PRINTSPR003671.1E-74960IPR001471AP2/ERF domain
CDDcd000181.71E-2749107No hitNo description
PRINTSPR003671.1E-77187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MESFSSDSLD SPMARRSASD EEAYSTVWSA PPKRRAGRTK FRETRHPVYK GVRRRNADKW  60
VCEVREPNKK SRIWLGTFPT AEMAARAHDV AAMALRGRSA CLNFADSAWL CPVPSSSNPK  120
DIQKAAVEAA EAFRPPTESD VTKSREDAAM AMTAGPSVPA ADDPFYMDDR LDFGMQGYLD  180
MAEGLLIDPP PMNADEEESD GSVSLWSYSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-14461041271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933896.11e-153dehydration-responsive element-binding protein 1G isoform X1
RefseqXP_010933897.11e-153dehydration-responsive element-binding protein 1G isoform X3
RefseqXP_029123066.11e-153dehydration-responsive element-binding protein 1G isoform X2
SwissprotA2XWL63e-69DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
SwissprotQ8H2733e-69DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBLM4PTJ31e-151M4PTJ3_ELAGV; Ethylene responsive transcription factor
STRINGXP_008803257.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.18e-58C-repeat-binding factor 4
Publications ? help Back to Top
  1. Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP
    Over-expression of OsDREB genes lead to enhanced drought tolerance in rice.
    Biotechnol. Lett., 2008. 30(12): p. 2191-8
    [PMID:18779926]
  2. Li S, et al.
    Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice.
    Front Plant Sci, 2016. 7: p. 465
    [PMID:27148296]