PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933923.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRF
Protein Properties Length: 260aa    MW: 27619.2 Da    PI: 9.378
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933923.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC83.12.4e-26129173145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     ++epgrCrRtDGKkWRCsr+v++++k+CErH+hrgr+rsrk++e+
  XP_010933923.1 129 EPEPGRCRRTDGKKWRCSRDVVPDQKYCERHMHRGRNRSRKPVEA 173
                     69****************************************997 PP
2QLQ61.22.8e-216499237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    aFT +Qlq+L++Q+l+yKy++a++PvP +L+++i+k
  XP_010933923.1 64 AFTFMQLQELEHQALIYKYMVAGVPVPLHLVLPIWK 99
                    8*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-96399IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.8E-156498IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.2696499IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.499129173IPR014977WRC domain
PfamPF088791.0E-22130172IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAEEQNPAPP PQEEQQQHSL LPPTSKIPRL SSDASGVVTM AAPSPLGLGL GLRLGLGGGY  60
SRPAFTFMQL QELEHQALIY KYMVAGVPVP LHLVLPIWKS VAASSYGPHH YPSFMGYGSL  120
CFDYRNSMEP EPGRCRRTDG KKWRCSRDVV PDQKYCERHM HRGRNRSRKP VEAGAGATAA  180
AASTATTTLQ VEANNNGSNT IPTTTYLSIA IPSGGGLHLM PTTNSSSSSS GGSNNVSPPR  240
LGFSPTSVLQ GGTACKTGPS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933923.10.0growth-regulating factor 10
SwissprotQ6EPP99e-67GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A2H3YT921e-124A0A2H3YT92_PHODC; growth-regulating factor 10-like
STRINGXP_008803298.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-38growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]