PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933936.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 335aa    MW: 38634.6 Da    PI: 4.921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933936.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.67e-55111401129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv +yLkkkv+++k++l +vike+d+y++ePwdL++  ++   e++ewyfFs++dkky+tg+r+nrat sg+Wkatg+dk+v
  XP_010933936.1  11 VPPGFRFHPTDEELVGYYLKKKVASQKIDL-DVIKEIDLYRIEPWDLQEwcRIGYeEQSEWYFFSHKDKKYPTGTRTNRATLSGFWKATGRDKAV 104
                     69****************************.9***************954544332566************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++ k++l+g++ktLvfykgrap+g+ktdW++heyrle
  XP_010933936.1 105 HD-KNKLIGMRKTLVFYKGRAPNGQKTDWIIHEYRLE 140
                     **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-598160IPR003441NAC domain
PROSITE profilePS5100558.48611160IPR003441NAC domain
PfamPF023654.9E-2812139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQVMDSMESC VPPGFRFHPT DEELVGYYLK KKVASQKIDL DVIKEIDLYR IEPWDLQEWC  60
RIGYEEQSEW YFFSHKDKKY PTGTRTNRAT LSGFWKATGR DKAVHDKNKL IGMRKTLVFY  120
KGRAPNGQKT DWIIHEYRLE SEENGPPQEE GWVVCRAFKK RPACPTRSVV DVWDSNYGYD  180
DPSRVRSSIV NPMEYLQMQP KSLLCKQETE LDHLNLLHSN QLFQLPQLES PSLPLVKQPS  240
LLSIATENED EEQTRSCNAI DKVTDWRALD KFVASQLSQE DRFSAERVVS DFGADNDSDM  300
ALLLLQSGRE EVGKLNGFLT SGEPECDIGI CVFEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-49816112169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933936.20.0NAC domain-containing protein 37
SwissprotQ9SL411e-142NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A3Q0IB250.0A0A3Q0IB25_PHODC; NAC domain-containing protein 37-like
STRINGXP_008803320.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-132vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]