PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010933996.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 167aa    MW: 19499 Da    PI: 6.2889
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010933996.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.44.8e-081161492154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  XP_010933996.1 116 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 149
                     469*****************************87 PP
2ELK27.47.6e-107091122
             ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                    ELK +L++++++++ ++++E++
  XP_010933996.1 70 ELKIELKQGFRSRIEDVREEIL 91
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.1847090IPR005539ELK domain
PROSITE profilePS5007111.75890153IPR001356Homeobox domain
SuperFamilySSF466891.63E-1692156IPR009057Homeodomain-like
SMARTSM003897.6E-1192157IPR001356Homeobox domain
CDDcd000865.27E-1193154No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2697156IPR009057Homeodomain-like
PfamPF059204.0E-18110149IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MACREIEQSL QDLTGVTLEE GTGATMSDDD DELQLECPLD MSVDGHDMMG FGPLLPTESE  60
RSLMERVRQE LKIELKQGFR SRIEDVREEI LRKRRAGKLP GDTTSVLKQW WQQHSKWPYP  120
TEDDKAKLVE ETGLQLKQIN NWFINQRKRN WHNNSQSATT LKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-1393149864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146166RKRNWHNNSQSATTLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933995.11e-120homeobox protein knotted-1-like 3
SwissprotQ94LW31e-106KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A2H3Z2161e-113A0A2H3Z216_PHODC; homeobox protein knotted-1-like 3
STRINGXP_008807225.11e-114(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-100KNOTTED-like homeobox of Arabidopsis thaliana 7