PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934031.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 353aa    MW: 38331.8 Da    PI: 9.4435
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934031.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.87.7e-3271175199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e+++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  +
  XP_010934031.1  71 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldMSTNEKGMLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaAR 165
                     89***************************9777889**************************************************965577788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_010934031.1 166 DRLFIDWRRR 175
                     8899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4166178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-3068159IPR015300DNA-binding pseudobarrel domain
CDDcd100174.33E-2669156No hitNo description
SMARTSM010195.8E-2171176IPR003340B3 DNA binding domain
PfamPF023621.5E-2871175IPR003340B3 DNA binding domain
PROSITE profilePS5086314.21271176IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEFTHGRRER FYSEDDHQEA ASKHPHLVPP SSSSSPPSSS STAFRWSGGA PGSGGGGSGD  60
APNYVEKEHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD MSTNEKGMLL SFEDRTGKPW  120
RFRYSYWNSS QSYVMTKGWS RFVKEKRLDA GDTVSFGRGV GEAARDRLFI DWRRRPEPHN  180
LPRQLPRLPL PLPGVSLARS VSPWGGRLFV PPAALVYDHG QQGYGYNAAN PGSGQFLFFR  240
SAAAGPPQIG VQPGGGSSSG DEVVAGVPLV LDSVPLVHSQ AQAKRVRLFG VNLDCPEPDG  300
GADDGNGGSL SMRRMQPHST AQLLQWSQGG AETSMAASRS PGKEKQSPLD LDM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-63661773115B3 domain-containing transcription factor NGA1
5os9_B2e-63661773115B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934031.10.0B3 domain-containing protein Os02g0683500
SwissprotQ6EU308e-87Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A2H3ZM480.0A0A2H3ZM48_PHODC; B3 domain-containing protein Os02g0683500-like
STRINGXP_008783755.11e-178(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-68B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]