PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934107.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 248aa    MW: 28346.3 Da    PI: 8.0046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934107.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.8e-15139221185
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f  +lt++++ ++++l+lp + ae++  + +    l++ d++  r W++++  +k ++ + l +GW++Fv+++ Lk+gD++vF++ 
  XP_010934107.1 139 FSLKLTNNNMENLRCLILPTESAERFFPDMP---SLMFWDQKLlRWWNFEYFRSKDRQCHQLVSGWSSFVEEKALKAGDTLVFSMF 221
                     56789999999***************54433...488888666699*****65666666************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.62E-15138236No hitNo description
SuperFamilySSF1019361.57E-15138224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-15138223IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.025139238IPR003340B3 DNA binding domain
PfamPF023621.7E-12140221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MASLPNNLHG FPWVAVKEEE EDPGFHMSSS LRQFPTTRQE GTHAMMVAHE STSSSRVNAW  60
TLQHLGSGLP TPYCIAAFQQ STAHIYQHRS NTLPGAHPHS AAASNLSRPH PPVCRFGFQD  120
AILRPHHLSF DGRFALQLFS LKLTNNNMEN LRCLILPTES AERFFPDMPS LMFWDQKLLR  180
WWNFEYFRSK DRQCHQLVSG WSSFVEEKAL KAGDTLVFSM FGILHNSSCY MIDVRRTVKL  240
FGTVIHID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664259.15e-48B3 domain-containing protein Os02g0683500-like
TrEMBLA0A3Q0IBP31e-46A0A3Q0IBP3_PHODC; B3 domain-containing protein Os02g0683500-like
STRINGXP_008803590.19e-68(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3754523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.12e-10related to ABI3/VP1 1