PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934135.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 364aa    MW: 38640 Da    PI: 8.6256
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934135.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.4e-41123199177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +Cq+egC adl++ak+yhrrhkvCe+hska+ v+++gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q
  XP_010934135.1 123 RCQAEGCGADLTHAKHYHRRHKVCEFHSKASIVITAGLSQRFCQQCSRFHVLAEFDQGKRSCRKRLADHNRRRRKSQ 199
                     6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-31119185IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.086121198IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-38122199IPR004333Transcription factor, SBP-box
PfamPF031102.9E-30124197IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMLEYEWGNP AAAAAAAMLL FGDQETGQDT GQDREVLFDN YGSHGGLGGV DFFPNPQPLT  60
AAALFSPSSS SSSSCHQRYG LALPPAPARI GLNLGVRTYF SSTSPEDQMV VGRVCRRRTR  120
TARCQAEGCG ADLTHAKHYH RRHKVCEFHS KASIVITAGL SQRFCQQCSR FHVLAEFDQG  180
KRSCRKRLAD HNRRRRKSQD LTTATNITAT QTNNGATNNN SGVTNNSVAN PERILFTTSS  240
STTTNNNNNI NNCSPTGPLG FTTCKPETES SVTPVSSPPP PLPLPLPAPA TAPRMALGLG  300
CGGGGLVTVP AAATGLSASS SAGTSPPSVS FLSHLVEFGG HENRYPSWDE AGDGRSIRGL  360
YQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-311241971184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934135.10.0squamosa promoter-binding-like protein 5
TrEMBLA0A2H3YB301e-156A0A2H3YB30_PHODC; squamosa promoter-binding-like protein 13
STRINGXP_008796149.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1946357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-44squamosa promoter binding protein-like 8