PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934316.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 246aa    MW: 27985.3 Da    PI: 6.6784
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934316.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.3e-52101381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrF P+deelv++yL kkv+++++++  ++ evd++++ePw+Lp  +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+++++ 
  XP_010934316.1  10 LPPGFRFYPSDEELVCHYLYKKVSNERISE-GTLVEVDLHTHEPWELPDVAKLSANEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRTIHDP 103
                     79*************************999.88***************87788999**************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +++ vg++ktLvfy+grap+g+k+ Wvmhe+rle
  XP_010934316.1 104 sSRAIVGMRKTLVFYQGRAPNGVKSGWVMHEFRLE 138
                     66677***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-608156IPR003441NAC domain
PROSITE profilePS5100558.43210156IPR003441NAC domain
PfamPF023654.6E-2811137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGLRDIESTL PPGFRFYPSD EELVCHYLYK KVSNERISEG TLVEVDLHTH EPWELPDVAK  60
LSANEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDRTI HDPSSRAIVG MRKTLVFYQG  120
RAPNGVKSGW VMHEFRLETP KSTPKESWVL CRVFHKRKGE TEQDNIGSFS PTWGPSSSQV  180
DQTSSSLPAV PHQHDSSSNP LLNLALLHCN LLDFPQEVGM SSRGGDEYGF LLDMGLEDHD  240
MREGGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-5111577169NAC domain-containing protein 19
3swm_B8e-5111577169NAC domain-containing protein 19
3swm_C8e-5111577169NAC domain-containing protein 19
3swm_D8e-5111577169NAC domain-containing protein 19
3swp_A8e-5111577169NAC domain-containing protein 19
3swp_B8e-5111577169NAC domain-containing protein 19
3swp_C8e-5111577169NAC domain-containing protein 19
3swp_D8e-5111577169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934316.30.0NAC domain-containing protein 21/22
SwissprotQ84TE61e-61NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2H3XKQ61e-152A0A2H3XKQ6_PHODC; NAC domain-containing protein 21/22-like
STRINGXP_008785238.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-80NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]