PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934576.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 159aa    MW: 18129.5 Da    PI: 10.9274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934576.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-192978255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p++   r+r +lg+f ta+eAa a+++a+++l+g
  XP_010934576.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAQEAAMAYDEAARRLYG 78
                    69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.54E-292888No hitNo description
PfamPF008474.3E-132978IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-212987IPR016177DNA-binding domain
SMARTSM003803.3E-362992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-302987IPR001471AP2/ERF domain
PROSITE profilePS5103222.5372986IPR001471AP2/ERF domain
PRINTSPR003671.6E-103041IPR001471AP2/ERF domain
PRINTSPR003671.6E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDNLRKSPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFS  60
TAQEAAMAYD EAARRLYGPD AYLNLPHLRS DINSAITGKQ PHRFKWFPSK NFTSMIPSYG  120
LLNLDAQHNV HIIHQKLQEF KNSRFSSSSS YSSVSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-173086663ATERF1
3gcc_A1e-173086663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934576.21e-116dehydration-responsive element-binding protein 2F
SwissprotQ9SVX54e-66DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A427AR755e-87A0A427AR75_ENSVE; Uncharacterized protein
TrEMBLA0A444DUA65e-87A0A444DUA6_ENSVE; Uncharacterized protein
STRINGXP_008809802.13e-86(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.19e-58ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]