PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934597.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family Trihelix
Protein Properties Length: 542aa    MW: 62801.4 Da    PI: 6.1043
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934597.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.46e-2194163170
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                     rW +qe+ aL+++  em+++++    k plWe+vs+k+ e g++rs+k+Ckek+en+++++k+ +eg  +
  XP_010934597.1  94 RWAQQEIIALLKIHFEMDTAFQYVTPKDPLWEDVSRKLLELGYNRSAKKCKEKFENIQRYHKRDEEGLVD 163
                     8**************************************************************9998766 PP
2trihelix95.35.8e-30326409186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k ev+aLi++r+++e+ +r+g lk+plWe++++ m++ g++rs+k+Ckekwen+nk++kkike++k+r se+s+tc+yf+ql+
  XP_010934597.1 326 RWPKMEVHALIKLRTNLESFYREG-LKGPLWEQIAIGMQQLGYNRSAKKCKEKWENVNKYFKKIKESNKNR-SENSRTCSYFNQLN 409
                     8****************9999988.*********************************************8.78889*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.004291153IPR001005SANT/Myb domain
PROSITE profilePS500906.64492151IPR017877Myb-like domain
CDDcd122033.35E-1993156No hitNo description
PfamPF138379.2E-1193161No hitNo description
SMARTSM007171.3323384IPR001005SANT/Myb domain
CDDcd122031.64E-23325389No hitNo description
PfamPF138373.7E-20325410No hitNo description
PROSITE profilePS500906.888326382IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MHQGRSPNLV SSLEFTLFGS SNNDRQSQIV EISSIDHLQQ QSVKATSPIE MMSPSVTAKN  60
FEESDSTMEE IFLNKEDALL PKEESKKDLE IESRWAQQEI IALLKIHFEM DTAFQYVTPK  120
DPLWEDVSRK LLELGYNRSA KKCKEKFENI QRYHKRDEEG LVDDSKVKGT SRKGRKRRRE  180
KGSKTTKTMM TFFEEMMRQV VERQDAMQHR FLKALEKWER DRMVREEAWR RQEIARLTHE  240
KELMTQEHAT IAVREQAIIT FLHKVTGRAI PIPPLSTTTI ATTPQSSLSQ QQQQQSSNDT  300
ELTIIPIAQQ QKMLTENTTI EFMSPRWPKM EVHALIKLRT NLESFYREGL KGPLWEQIAI  360
GMQQLGYNRS AKKCKEKWEN VNKYFKKIKE SNKNRSENSR TCSYFNQLNA FYHNRSLSQI  420
SRIFQQPESS PNPNPTQQVD GNALITMFPS QLELVKGETS IEGSHADNNN KNKENFEGDF  480
GCSNTNMTSE KVQDAGKELI DPSNQAMVDD HDKLEEPNDE NIDQEDENQN GDQNEHGEDG  540
KI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171179RKGRKRRRE
2174178RKRRR
3174180RKRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934597.10.0trihelix transcription factor GTL1
TrEMBLA0A2H3Z9B40.0A0A2H3Z9B4_PHODC; trihelix transcription factor GTL1-like isoform X1
STRINGXP_008810371.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.28e-55Trihelix family protein