PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934643.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 292aa    MW: 31707.8 Da    PI: 10.328
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934643.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-1496140347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + k+lG+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_010934643.1  96 PWTEEEHRTFLAGLKMLGKGDWRGISRNFVTTRTPTQVASHAQKY 140
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.94389145IPR017930Myb domain
SuperFamilySSF466891.35E-1791146IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1792144IPR006447Myb domain, plants
SMARTSM007171.2E-1093143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-1195139IPR009057Homeodomain-like
PfamPF002492.1E-1196140IPR001005SANT/Myb domain
CDDcd001672.52E-996141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEGGRIRQDS RSEKRLKLFG VTILGDGGGR KEAQDVVRKE AAEEVMRKSK SMGNLAACGS  60
SPAAESGAGD NGYLSDGGLV QNSTRRGGRE RKRGVPWTEE EHRTFLAGLK MLGKGDWRGI  120
SRNFVTTRTP TQVASHAQKY FLRQSNPTKK KRRSSLFDVA PESETSALPL SLKKSCVVTE  180
EVNHHLQDSS LQVRISGNSK DQVVPTLFLT PPLDISNQAF TSFQASFTAC APDFLKVSLS  240
PSIQLHPHYP TQSTAASPPP EKGNLELSIA PPQQHSLTKL SSPKAAETIS VI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919736.11e-88transcription factor KUA1
TrEMBLA0A2H3Z4L26e-85A0A2H3Z4L2_PHODC; transcription factor MYBS2-like
STRINGXP_008808102.11e-85(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-42MYB_related family protein