PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934646.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 190aa    MW: 21479.3 Da    PI: 7.8486
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934646.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-084364526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     Cr f++ G+C++G +C +aHg
  XP_010934646.1 43 ACREFRQKGECPRGHNCEYAHG 64
                    5********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.0943866IPR000571Zinc finger, CCCH-type
SMARTSM003560.00113865IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-63869IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-64364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-64467IPR000571Zinc finger, CCCH-type
SMARTSM00356127497IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MYIYKVKRCS KTKSHDWTEC PYAHHGEKAR RRDPNRYPYS GIACREFRQK GECPRGHNCE  60
YAHGVFEFWL HPTRYRTRVC DAGDACTRRV CFFAHTPEQL RPVVIRDCFR CGIGGCVAKS  120
SWRGMPAMAA VAAAAACSSF HAGMNEVNGN DLVGGDGEWF DFPHLDWVEE LLTEKGEGEV  180
GLGVDWGVKL
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019709608.11e-141zinc finger CCCH domain-containing protein 2
SwissprotO650363e-47C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
SwissprotP937555e-46C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2I0AYR63e-64A0A2I0AYR6_9ASPA; Zinc finger CCCH domain-containing protein 30
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.12e-49C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]