PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934906.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 699aa    MW: 77639.6 Da    PI: 4.7285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934906.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.7e-5091421128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrFhPtdeelv+ yLk+k++g+  +  e+i+e+di+k+ePwdLp k  +++++ ew+fF+++d+kya+g+r+nrat++gyWkatg+d+ + 
  XP_010934906.1   9 LPIGFRFHPTDEELVNVYLKRKISGRIRNDMEIIPEIDILKCEPWDLPdKsIIRSDDPEWFFFAPKDRKYANGNRSNRATEAGYWKATGRDRLIR 103
                     699***********************9877799**************96446667778************************************* PP

             NAM  94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     sk    +++l+g+kktLvf++grapkg +t+W++heyr 
  XP_010934906.1 104 SKaapgRQNLIGMKKTLVFHRGRAPKGIRTRWIIHEYRT 142
                     *999988899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-557163IPR003441NAC domain
PROSITE profilePS5100556.2729163IPR003441NAC domain
PfamPF023652.1E-2510141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MMTISPGSLP IGFRFHPTDE ELVNVYLKRK ISGRIRNDME IIPEIDILKC EPWDLPDKSI  60
IRSDDPEWFF FAPKDRKYAN GNRSNRATEA GYWKATGRDR LIRSKAAPGR QNLIGMKKTL  120
VFHRGRAPKG IRTRWIIHEY RTTEREFESG DQGGYVLYRL FKKPEEKGSN SKADEMEKSG  180
FSPTPTKSSP DGTLHEEDSM EEISTPVNQK SPESATCSVE PDERSCNVAA DNHDAKAGMH  240
DVSTQYHGPH HQQIDSNGFP NFSSPMLPCT DDQESPMEDV DDADRDSFHE FLDAVLGNPD  300
EYSPRASDAQ KNSVAESVPR HGIWDSASFR DSGTSSDIDT EAGLPQEHVS LEASEWSEEP  360
SFLLNELLQM NSSYGYPETE PHLSAPYENA SLLPYDSTGP DVCSVDPASE SLQYLFDSME  420
ASNNQKNIAN NGDGLEVTGI EFRPHQLQHP SDSKNISAQQ STITSRFRLQ GPVQNVSFAL  480
AGSESSSSGD DHEDKEAMRK ALQDLCDSTE ESLTQKDTPS NEDGFEGTGI KIRTRKAHPP  540
SLNKLSSKRG RVFGRIRLQA SLEVGSFSAI AGESSSSKDD QVDRESTTES LQAGEHVDDN  600
LAEFREISKP ALLDKLEQLS IHDDATHSSE LYQESKPLLR LRTKGTYDDA NVLKDPPSHP  660
GISGTGSVVA YVVRLVLAVI LLLMCFGIWR CINSQYVPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-41816316165NO APICAL MERISTEM PROTEIN
1ut4_B1e-41816316165NO APICAL MERISTEM PROTEIN
1ut7_A1e-41816316165NO APICAL MERISTEM PROTEIN
1ut7_B1e-41816316165NO APICAL MERISTEM PROTEIN
4dul_A1e-41816316165NAC domain-containing protein 19
4dul_B1e-41816316165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934906.10.0protein NTM1-like 9 isoform X3
TrEMBLA0A2H3XUF40.0A0A2H3XUF4_PHODC; protein NTM1-like 9 isoform X1
STRINGXP_008788721.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-73NAC transcription factor-like 9