PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010934919.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26910.3 Da    PI: 9.062
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010934919.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF977.8e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krienk+nrqvtfskRrng+lKKA+ELS+LCdaeva+iifs +gklye+ 
  XP_010934919.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSILCDAEVALIIFSGRGKLYEFG 58
                    79**********************************************95 PP
2K-box79.11.1e-2677156584
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                     ++   +e+ ++++++e++kLk+++e+Lqr qRhllGedL++Ls+keLqqLe+qLe++l++ R++++++l +  ++l++k 
  XP_010934919.1  77 QDDTIDEHGTQNWYHEFSKLKAKYESLQRRQRHLLGEDLGTLSVKELQQLERQLESALSRTRQRRERHLEDINRQLKNKL 156
                     444478999**************************************************************999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.137161IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.42E-34289IPR002100Transcription factor, MADS-box
CDDcd002659.40E-46278No hitNo description
PRINTSPR004041.4E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-323859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-2283155IPR002487Transcription factor, K-box
PROSITE profilePS5129713.22186191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FSKRRNGLLK KAYELSILCD AEVALIIFSG RGKLYEFGSV  60
GISKTIERYQ SCHYASQDDT IDEHGTQNWY HEFSKLKAKY ESLQRRQRHL LGEDLGTLSV  120
KELQQLERQL ESALSRTRQR RERHLEDINR QLKNKLEVGG YSFRAIQGSL ESNAMIAGNP  180
FPLHHSQSNT MVCEPALQTG YHHFFPPETA ISSNSAAENN FMQGWLFELN GHDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-21169169MEF2C
5f28_B4e-21169169MEF2C
5f28_C4e-21169169MEF2C
5f28_D4e-21169169MEF2C
6byy_A4e-21169169MEF2 CHIMERA
6byy_B4e-21169169MEF2 CHIMERA
6byy_C4e-21169169MEF2 CHIMERA
6byy_D4e-21169169MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127140RQLESALSRTRQRR
2137142RQRRER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934919.11e-176MADS-box transcription factor 6 isoform X3
SwissprotQ8LLR11e-104MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0MTC21e-118A0MTC2_CROSA; MADS-box transcription factor AGL6a
STRINGXP_008797646.11e-115(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-90AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]